| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2908 |
|---|
| Symbol | |
|---|
| ID | 4581475 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | - |
|---|
| Start bp | 70527 |
|---|
| End bp | 71294 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639770235 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_916688 |
|---|
| Protein GI | 119385633 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.415659 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATCG AGAGCAGGGT TTTTGTGATC ACAGGCGCCG GTTCCGGCCT TGGCGCGGCG
GTGGCGCGCA TGGCGGTCGG CGCGGGCGCG CGGGCGGTGC TGCTGGACGT GAATGCCGAG
GCCGGCGCGG CGATGGCTGC GGAACTGGGC GAGGCGGCGC GTTTCGTCAG GACCGACGTG
ACCAGCGGCC CGGAGGGCGA GGCGGCGGTG GCCGCGGCGC TGGAGGCGTT CGGCCGGATC
GACGTGGCGG TGAATTGCGC CGGCGTGGCT CCGGGCGAGA AGATCGTCGG GCGCGAGGGG
CCGCACGGGC TGGAGAGTTT CGCCCGCGCC GTCCAGATCA ACCTGATCGG CACCTTCAAC
ATGCTGCGGC TGGCCGCCGA TGCCATGGCG AAGAACGCGC CGGGCGAGGG CGGCGAGCGC
GGGGTGATCG TCAACACCGC CTCGATCGCG GCCTATGACG GACAGATCGG GCAGGCGGCC
TATGCGGCCT CGAAGGGCGG CGTCGCGGCG CTGACCCTGC CGGCGGCGCG GGAACTGGCG
CGGCACGGCA TAAGGGTGGT GACCATCGCG CCGGGCATCT TTGCCACGCC GATGATGGCC
GGGCTGCCGC AGGAGGTGCA GGACAGCCTG GGCGCCAACG TGCCGTTTCC GCCGCGGCTG
GGCAATCCGG CGGAATATGC GGCGCTGGTG CGCCATATCG TCGAAAACCA GATGCTGAAC
GGCGAGGTCG TCCGGCTGGA CGGCGCGCTG CGCATGGCAC CGAAATAG
|
|---|
| Protein sequence | MQIESRVFVI TGAGSGLGAA VARMAVGAGA RAVLLDVNAE AGAAMAAELG EAARFVRTDV
TSGPEGEAAV AAALEAFGRI DVAVNCAGVA PGEKIVGREG PHGLESFARA VQINLIGTFN
MLRLAADAMA KNAPGEGGER GVIVNTASIA AYDGQIGQAA YAASKGGVAA LTLPAARELA
RHGIRVVTIA PGIFATPMMA GLPQEVQDSL GANVPFPPRL GNPAEYAALV RHIVENQMLN
GEVVRLDGAL RMAPK
|
|---|
| |