Gene Pden_2842 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_2842 
Symbol 
ID4581429 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp10132 
End bp11280 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content69% 
IMG OID639770169 
Productsuccinyl-diaminopimelate desuccinylase 
Protein accessionYP_916622 
Protein GI119385567 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID[TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCCGA TCCCCGATCC CGCCCAACTG ACCGCCAGGC TGATCCGCTG CGCCTCGGTC 
ACGCCCGACG AGGGCGGCGC GCTGGTCTTG CTGGCCGATG TGCTGGGCGC GGCGGGGTTC
GAATGCCACC GCGTCGACCG CGAGGGCGTG CCGAACCTGT TCGCGCGCTG GGGGGCACAG
GGGGCCAGGA CCTTCGGCTT CAACGGCCAT ACCGACGTGG TGCCGCCGGG AGATCCGGCC
AGCTGGACGC ATCCGCCCTT TTCCGGGCAC GAGGCCGAGG GCTGGATCTG GGGCCGCGGC
GCCACCGACA TGAAATCCGG CGTCGCCGCC TTTGCCGCCG CCGCCATCGG CTTCGTGACC
CAGACCCCGC CGCCGGACGG CGCGGTGATC CTGGCCATCA CCGGCGACGA GGAGGGGCCC
GGCAAGCACG GCACCCGCGC GCTGCTCGAC TGGATGGCGG CGCGGGGCGA GCGGATGGAT
GTCTGCATCG TTGGCGAGCC TTCCAACCCC GACCGCATGG GCGAGATGAT CAAGATCGGC
CGCCGCGGAT CGATGACCTT GCAGATCGAG GCGCACGGCA TCCAGGGCCA CGCCGCCTAT
CCGCATCGGG CCCGCAACCC GATCCACGCG CTGCTGCGGC TGCTGCACGA GCTGACCGAC
GCGCCGCTGG ACGAGGGGAC CGAGCATTTC GATCCCTCGG GATTGCAGGT GACGACGGTC
GATTGCGGCA ACCCGGCCTC GAACGTGATC CCGGAACGGG CGCGTGCGGT GATCAACATC
CGTTTCAACG ACGCGCATAC GGCCGAAAGC CTCGACCGCA TGATCCGTGC CCGCGCGGCG
GCGATCTCGG CCGAGACCAA GGTGGACTTC GCCATCTCGA CCGATGTGTC GGGCGAAAGC
TTCCTGACCG CGCCCGGCCC CTTCGTCGAT CTGGTCGCCG GCGTGGTGCG CGAGGAGACG
GGGCTGGACC CTGTGCTCTC GACCTCGGGC GGCACCTCGG ATGCGCGTTT CGTCAAGGAT
CATTGCCCGG TGCTTGAATT CGGGCTGGTC GGGCATTTCA TGCATCAGGT CGACGAACGC
GTGCCGGCCG ACCAGGTCCG CCAGCTTGCC CGCATCTATC GCCGCATCCT GGAGCGTTAC
TTCGCATGA
 
Protein sequence
MTPIPDPAQL TARLIRCASV TPDEGGALVL LADVLGAAGF ECHRVDREGV PNLFARWGAQ 
GARTFGFNGH TDVVPPGDPA SWTHPPFSGH EAEGWIWGRG ATDMKSGVAA FAAAAIGFVT
QTPPPDGAVI LAITGDEEGP GKHGTRALLD WMAARGERMD VCIVGEPSNP DRMGEMIKIG
RRGSMTLQIE AHGIQGHAAY PHRARNPIHA LLRLLHELTD APLDEGTEHF DPSGLQVTTV
DCGNPASNVI PERARAVINI RFNDAHTAES LDRMIRARAA AISAETKVDF AISTDVSGES
FLTAPGPFVD LVAGVVREET GLDPVLSTSG GTSDARFVKD HCPVLEFGLV GHFMHQVDER
VPADQVRQLA RIYRRILERY FA