Gene Pden_2794 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_2794 
Symbol 
ID4581373 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp2811921 
End bp2815295 
Gene Length3375 bp 
Protein Length1124 aa 
Translation table11 
GC content71% 
IMG OID639770120 
ProductUvrD-like DNA helicase domain-containing protein 
Protein accessionYP_916574 
Protein GI119385518 
COG category[L] Replication, recombination and repair 
COG ID[COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 
TIGRFAM ID[TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.370193 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGATG AGGCCACCCT TGCGCAGGTG CGGGCGGCTG ACCCGCATCG CTCGACCTGG 
CTGACGGCCA ATGCCGGCTC GGGCAAGACG CGAGTGCTGA CCGACCGGGT GGCGCGGCTG
CTTCTGGCCG GGACGGCGCC CGAGCGCATC CTGTGCCTGA CCTATACCAA GGCGGCGGCG
AGCGAGATGC AGAACCGCCT GCTGGCGCGG CTGGGCCGAT GGGCCATGCT GCCCGAGGCG
GAACTGCGCG CCGAACTGGC GCGGCTGGGC GAGGCGGGCG CCCCCGACCT GCCCGCCGCG
CGCCGGCTTT TCGCCCGCGC CATCGAGACG CCGGGCGGGC TGAAGGTCCA GACCATCCAC
AGCTTCTGTG CCGGGGTCTT GCGCCGCTTT CCGATCGAGG CCGGCGTGCC GCATGGCTTT
ACCGAGCTTG ACGACCGCAG CGCCGCCCTG ATCCGCGCCG AGATCATCGA GGAAATGGCC
CGCGACCATG CGCCCGAGTT GCAGGACCTG CTGGCGCTGC ATTCGGGCGA GAGGCTCGAC
GCCTTCCTCG CCGGTCTGCG CGGGTTCGAG GCCCCTGCGG ACCGGGACGC GCTTTGGGCG
GCCTGCGGGC TGGCGCCGGG CGAGGATATG CAGTCGCTCT TGGCGGAATG CTTTGCCGCT
GGCGCTACGG TGATCGCCGC GCTGGTCCCG CATCTGCTGA AAAGCGGCGC GAACGACCAG
AAGGCGGCGG CGAAGCTTGC GCCCGGCAAT TGGGTGCAGC CTGGGCCGGC GGAACTGGCG
ATCCTGGAAT CCGTGCTGCT GACCGGGGCA AGCGCCAAGG AACCCTTTAC CGCGAAATAC
GACAGCTTCC CCACCAAGGC GCTGCGCAAC GGTCCTTGCG CGGAACTGCT GGACGACCTC
GCCATCCTGA TGGAGCGGGT CGAGGCCGCC CGCCCGCGTC GCATCGCACT GGCCCATGCC
GAACGGACGC TGGCGCTGAA TCGCTTCGGC CATGCCTTCC TGAACCGCTA TCGCGCGCAG
AAGGCGGCGC ATGGCCGGCT GGATTTCGAC GACCTGATCG ACCGCACCGC GCGGCTTCTG
TCGGAAAACA GCATGGCGCA ATGGGTGCTG TTCCGCCTGG ACGGCGGCAT CGACCATATC
CTGGTCGACG AGGCGCAGGA CACCAGCCCC GCGCAATGGC AGGTGATCGA GCGGTTGACC
GACGAGTTCA CCTCGGGCCA GGGCGCGCGC GACCAGACCC GCAGCCTGTT CGTGGTGGGC
GACCCGAAAC AGTCGATCTA CAGCTTCCAG GGCGCCGACA TCGCGGTTTT CGAGGCTCGC
CGGACCGGCT TTGCGCAAGC CTTCGACGCT GTGCAAGAGC CGATGCAGGT GCTGGAGCTG
CGGCATTCCT TCCGCAGCTC GACCGCGATC CTTGCGCTGG TCGATCAGGT CTTTGCCGGC
GATGCGGCGC GCGGCCTGGG CGATCCGCCG CAGCATCGCG CCTTTCGCAC CGACATGCCG
GGGCGCGTGG ACCTGTGGCC GGCGATCCCC AAGCCCGAAA AGCCCGAGCC GGGCGATTGG
ACCGACCCGG TGGACCTGCC GGCCGAGAAC TCCGAGACGG TGCAACTGGC CCGCGCCGTC
GCCCGCGCCG TCGGCGAGAT GCTGGGCCAG CCGATCTTCG ACGCCAAGAC CGGCAGGCTA
CGCCGCATCC GCGCCGGCGA CGTGCTGATC CTGGTCCAGC GCCGCTCGGA ACTGTTCGCC
GAGATCATCG CCGCGCTGAA AGCCGCGAAC CTGCCCGTCG CCGGCGCCGA CCGGCTGAAG
TTGGCCGGAG AGATGGCGGT GCAGGACATC CGCGCCCTGC TGTCGGTGCT GGCCACGCCC
GAGGACGACC TGTCGCTGGC CGCTTGCCTG CGCTCGCCGC TGTTCGACCT GTCCGAGGAG
GAGCTTTACC GCCTTGCTGC CGGGCGCAAG CGCGGCCAAT ACCTGTGGCG GCGTCTGCGC
GAGTCGCATC ATCGCCATGC GGTCGAGGTG CTGGCCGACC TGATGGGCCA GACCGGCTTC
ATGCGCCCTT ATGACCTGAT CCAGCGCCTG CTGATCCGGC ATGGCGGGCG CGAGCGTCTG
GTCGCCCGGC TTGGCCCCGA GGCGCAGGAC GGCATCGACG AACTGCTGTC GCAGGCGCTG
AGCTATGAAA GCTCGGAAAC GCCCTCGCTG ACCGGCTTCC TGGTCTGGCT GACCGGCGAC
GATGTCGAGG TGCGCCGCCA GCCGGGCTCG GCCGGGGATG GCGAGGGGCT GATCCGGGTG
ATGACCGTGC ATGGCTCGAA GGGCCTGGAA AGCCCCATCG TCATCATGCC CGACGCGGCC
AAGCGCAAAC CCCCGCGCGA GGCGCCGGTG CTGCCCGGCC CGGACGGGCT GTCCCTGTGG
CGCGGCAGGA AGGGCGAACG GCCCGATCCG GTCGAGGAAC TGGCGGCGAT GCAGACCGAG
CGGCAGTTGC AGGAACGCAA GCGGCTGCTC TATGTCGGCC TGACCCGTGC CGAAAGCTGG
CTGATCGTCG CGGCGGCGGG CGAGACCGGC GCGGGCGAGG ACAGCTGGCA CGCCATGGTC
GAGGCCGGCA TGGGCCGCGC CGATTTGACC GAGACGCGCC TGCCCGCCCC ATGGGGTGGC
GAGATCCGAC GGCTGTCCTT TGGCGACTGG CCTGAAACCG CGCCGGATGC GGTGCTGGCG
GAAAGACCCC TGCCGGCCGA GCCGGACTGG CTGCGCGCCC CGCCGCCGCC CGCGCCCGGG
AAGGTCCGAC CCGTCGCTGC GACGGCCTTG GGCGGTGCCA AGGTGATCGG TGCGGCGGGC
GAGGGCGATG CCGAGGCGGC GATGCTGTTC GGCACCAGGC TGCATCTGCT GCTGGAGCAT
CTGCCGGGCC GCGACCCTGC GGATTGGCCC GAACTGGCCC GCGACGTGCT GGCCGATGCC
GAGGGCGGCT TGCCCGGCCC CAACGAACTG GCCGCGCTGC TGACCGAGGC CCGCGCGGTG
ATCGAGGCGC CGGATCTGGC ACAGGTCTTT GCGCTCTCCG ACACGGCCGA GGTGCTGGCC
GAGGTGGCGC TGGCTGCGCC CGTTCCGGGC ATCGGCACCA TGACGGGGGC GGTGGACCGG
CTGGTGGTGG AACCGGGGCG GATCCTGGCG GTGGACTACA AGTCGAACCG CGAGGTGCCG
GATACACCCG ACGCGGTGCC GCTGGGCATC CTGCGGCAGA TGGCGGCCTA TCGCGCGGCG
CTGCGGCTGA TCTGGCCGGC CATCCGGGTC GAGGTCGCGG TGCTGTGGAC GGCCTCGCGC
AGCCTGATGG CGCTGCCCGA CGACCTGCTG GATCGGGTGA TGGCGGGCCT TGACCCCAAC
CGCCCCGGTG CCTAG
 
Protein sequence
MMDEATLAQV RAADPHRSTW LTANAGSGKT RVLTDRVARL LLAGTAPERI LCLTYTKAAA 
SEMQNRLLAR LGRWAMLPEA ELRAELARLG EAGAPDLPAA RRLFARAIET PGGLKVQTIH
SFCAGVLRRF PIEAGVPHGF TELDDRSAAL IRAEIIEEMA RDHAPELQDL LALHSGERLD
AFLAGLRGFE APADRDALWA ACGLAPGEDM QSLLAECFAA GATVIAALVP HLLKSGANDQ
KAAAKLAPGN WVQPGPAELA ILESVLLTGA SAKEPFTAKY DSFPTKALRN GPCAELLDDL
AILMERVEAA RPRRIALAHA ERTLALNRFG HAFLNRYRAQ KAAHGRLDFD DLIDRTARLL
SENSMAQWVL FRLDGGIDHI LVDEAQDTSP AQWQVIERLT DEFTSGQGAR DQTRSLFVVG
DPKQSIYSFQ GADIAVFEAR RTGFAQAFDA VQEPMQVLEL RHSFRSSTAI LALVDQVFAG
DAARGLGDPP QHRAFRTDMP GRVDLWPAIP KPEKPEPGDW TDPVDLPAEN SETVQLARAV
ARAVGEMLGQ PIFDAKTGRL RRIRAGDVLI LVQRRSELFA EIIAALKAAN LPVAGADRLK
LAGEMAVQDI RALLSVLATP EDDLSLAACL RSPLFDLSEE ELYRLAAGRK RGQYLWRRLR
ESHHRHAVEV LADLMGQTGF MRPYDLIQRL LIRHGGRERL VARLGPEAQD GIDELLSQAL
SYESSETPSL TGFLVWLTGD DVEVRRQPGS AGDGEGLIRV MTVHGSKGLE SPIVIMPDAA
KRKPPREAPV LPGPDGLSLW RGRKGERPDP VEELAAMQTE RQLQERKRLL YVGLTRAESW
LIVAAAGETG AGEDSWHAMV EAGMGRADLT ETRLPAPWGG EIRRLSFGDW PETAPDAVLA
ERPLPAEPDW LRAPPPPAPG KVRPVAATAL GGAKVIGAAG EGDAEAAMLF GTRLHLLLEH
LPGRDPADWP ELARDVLADA EGGLPGPNEL AALLTEARAV IEAPDLAQVF ALSDTAEVLA
EVALAAPVPG IGTMTGAVDR LVVEPGRILA VDYKSNREVP DTPDAVPLGI LRQMAAYRAA
LRLIWPAIRV EVAVLWTASR SLMALPDDLL DRVMAGLDPN RPGA