| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2727 |
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| Symbol | |
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| ID | 4580362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 2746148 |
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| End bp | 2747542 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639770053 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_916507 |
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| Protein GI | 119385451 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.226974 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCGCA AAACGCTGAG AACACTGCGG CGCCCGCTGA TCGCGGCCCT GTTCGCTGGC
GCGACGGCCG TTCCGGCAAG CGCCGAATCG CTGGCCGATG CCATGGTCGC AGCCTATCGC
CATTCGGCAT TGCTGGAGCA GAACCGCGCC GTCCTGCGCG CCGCGGACGA GGATGCGGCG
ACCGCCCTGG CGCAATTGCG CCCCGTTGTG CAATGGATCG CCGAGCACAG TTTCCAGAAG
ATCAACGGCC TGGCGATCGG CCGCTCGACC AGCATCGGCC TGCAAGCCCA GATCACGCTT
TACGACTGGG GTCGCAACGC CATCGCCATC GACGCCGCCA AGGAAACCGT GCTGGCCACT
CGCGCCGCGC TGGTGGGCGT CGAACAGGAC GTGCTTCTGG GCGCGGTCCA GGCCTATCTG
GATGTGCGCA GCGCGACCGA ACAGGTTGAT CTGCAATCCA ATTCCGTGCG CGTGATCGGG
CAGGAACAGC AGGCAGCCGC AGATCGTTTC GAGGTGGGCG AGATCACTCA GACCGACGTG
TCGCAGGCCG ATGCCGCCCT GGCCGCGGCG CGCGCCAGCC TCGCGGCCGC ACGAGGCAAT
CTGGAGGTGG CGCGCGAGGT TTATCGGGCC GCGACCGGCC GGGCGCCTGG CCAGCTCGAT
CCGCCGCCGC CCACCCCGTC GCTGCCCGCC TCGCTGGAGA CGGCACGGCA GATCGGCCAG
CGCAGCCATC CCGCGATCTC GCAGGCACAG CGCCTGGCTG CTGCCGCCGA ACTGGGCGTC
GCCGCCGCTG CCGCCGAGCG CAATCCGACG CTGAGCGGCC AGGCCAGCAT CGGCCGCTCG
CACGAGCTTT CGATCCAGGG TCAGGAATCG ACCCGCAACA GCCTTGGCGC CTCGCTCAGC
CTGTCGCAGA CGATTTATTC CGGCGGGCGC CTGCCCTCGG CCCATCGCAA GGCGATGGCG
CGGCGGGACG AGGCGCGGGC GGGACTGCTT CAGGTTTCGC GCCAGGTCGA CGAAGCGGTC
GGCCGGGCCT GGGCGGGAAT CGATGTGGCG CGGGCACAGA TCCGCGCCAT CGACGAGCAG
ATCGTCGCCG CGCAGCAGGC CTACGAAGGC GTGCGCGAGG AGGCGACGCT GGGCGCTCGC
ACCACTCTGG ACGTGCTGGA TGCCGAGCAA TCGCTGCTCG AAGCGCGGGC CGACAAGATT
TCGGCAGAGG CCAATCTGCA ATTAGCACAT TATCAACTTC TGGCTGCTAT GGGTCTGTTG
ACGGTGGAAA ACCTGAAACT GGGGATACCG ACCTATGACC CATCGGCCTA TTACAATGCG
GTGCAGGACG CACCCTATAC CAGCAGGCAG GGCGAAAGCC TCGACCGCGT GTTGCGCGCG
ATCGGCAGGG ACTGA
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| Protein sequence | MFRKTLRTLR RPLIAALFAG ATAVPASAES LADAMVAAYR HSALLEQNRA VLRAADEDAA
TALAQLRPVV QWIAEHSFQK INGLAIGRST SIGLQAQITL YDWGRNAIAI DAAKETVLAT
RAALVGVEQD VLLGAVQAYL DVRSATEQVD LQSNSVRVIG QEQQAAADRF EVGEITQTDV
SQADAALAAA RASLAAARGN LEVAREVYRA ATGRAPGQLD PPPPTPSLPA SLETARQIGQ
RSHPAISQAQ RLAAAAELGV AAAAAERNPT LSGQASIGRS HELSIQGQES TRNSLGASLS
LSQTIYSGGR LPSAHRKAMA RRDEARAGLL QVSRQVDEAV GRAWAGIDVA RAQIRAIDEQ
IVAAQQAYEG VREEATLGAR TTLDVLDAEQ SLLEARADKI SAEANLQLAH YQLLAAMGLL
TVENLKLGIP TYDPSAYYNA VQDAPYTSRQ GESLDRVLRA IGRD
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