| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2722 |
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| Symbol | |
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| ID | 4580357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 2740064 |
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| End bp | 2743162 |
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| Gene Length | 3099 bp |
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| Protein Length | 1032 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639770048 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_916502 |
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| Protein GI | 119385446 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.255562 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAAT TCTTCATTCA CCGCCCGGTC TTTGCCTGGG TGCTGGCCAT CGTGACCATG
CTGATCGGGA CCTGGTCGCT GATCGGCCTG CCGGTTTCGC AATATCCCGA CATCGCGCCG
ACCACGATCC GCATCACCGC CAACTATTCC GGCGCGACGG CGCGGGCGGT GCAGAACTCG
GTCACCACGC CGATCGAGGA TGCGCTGACC GGGCTGGACG GGCTTCTCTA TACCGTCTCG
TCTGCCTCGA CCGGACGGAG CGTCATCGAG CTGACCTTCG ACGACAGCGT GGAGCCGGTC
GATGCGCTGA ACGAGGTGCA GTCCAAGGTC CGCTCGGTGG AAAGCCGGCT GCCCACTCCG
GTCCAGAACG ACGGCGTCTC GGTCACCCGC TCGTCCTCGT CGATCCTGAT GGTCGGCTCG
CTGGTCTCGA CCACCGGCCA GCATTCCACC ATCGAGCTGG GCAACCTGCT GGAACAGGTG
GTCGAGGGCC CGGTCAAGCG CACCGAGGGC GTGGGCGGGG TCAACGTCTT CGGCTCGGGC
TATGCGATGC GGATCTGGAT GGACCCGCTG CGGCTGGCGC AGTTCCAGCT GACGCCCACG
GACCTGACCA CCGCCGTGGC GCAGCAGAAC AGCACCGTGT CGGTCGGCGC ACTGGGAGAG
CAGCCGGTGG TGGCGGGCCA GCAATTCACC GCAAACATCA CCGCGCAAAG CCAGCTGACC
TCGGTCGAGG ATTTCCGCAA CATCCTGCTG AAGACCGGCG AGGACGGCGC CACCGTGCGC
CTGGGCGACG TGGCCGAGGT CGAGATCGGC CAGACCCGAT ATGGCCGCGA TTCGCGCTTC
AACGGCATGA ACGCCTCGGG CTTTGCGGTG AACCTGGCCA CCGGCGCCAA TGCGGTCGAG
ACGGCAAGCG CCGTGCGCGC CACGCTGGAG GGGCTGAAGA ACGCCCTGCC CGAAGGGGTC
GAGGTGCATA TCGCCTATGA CACCGCGCCC TTCGTCGAGC TGTCGATCGA GAAGGTCTAT
CACACGCTGA TCGAAGCCAT CGGGCTGGTC TTCCTGGTCA TCCTGCTGTT CTTGCAGAAC
TGGCGGGCGA CGCTGATCCC GATCATCGCC ATCCCGGTGG TTCTGCTGGG CACCTTCGGC
ATGCTGGCGG CGCTGGGATA TTCGGTGAAC ACGCTGACCA TGTTCGCGAT GGTGCTGGCC
ATCGGCCTTT TGGTGGACGA CGCCATCGTC GTGGTCGAAA ACGTCGAGCG GGTGATGCAG
GAGGACGGGC TGGGCCCCGT CGAGGCCACG GAAAAGAGCA TGGGCCAGAT CAGCGGCGCG
CTGATCGGCA TCGCGCTGGT CTTGTCGGCG GTGTTCCTGC CCATGGGCTT CATGCCCGGC
TCGACCGGGG TGATCTATCG CCAGTTCTCG GTCACGATCA TCACCGCGAT GGTGCTGTCC
TTGCTGGTGG CGCTGATCCT GACGCCGGCG ATGTGCGCCA GCCTTCTGCG GCAAAGCCAC
GGCCCGGCGC GCTTTGCCCC CGCCCGCTGG TTCAACGCCG GGTTCGAGCG GGTGACGCGC
GGCTATTCCG CAACCGTGCG CCGCAGCCTG CGCCGGCCGA TGCTGGTCAT GCTGCTGCTT
GCGGCCATCA GCTACGGCGC GACCGATCTT TTCGGCCGCA TGCACACCAC CTTCATCCCC
GGCGAGGACC AGGGCGTGCT GCAATCGCGC ATCACCCTGA CCGAGGGCTC GACCGCGCAG
CAGACCGCCG CCGTCGTGCA GGAAATCGAG AACTACATGC TGACCGAGGA AAAGGCGGCG
GTGGAATCGG TCTTCGTCGC CATGGGCTTC GGCTTTTCGG GCACCTCGCA AAGCCGGGCC
ATGGTCTTTG TCAAGCTGCG CGATTTCGAC CAGCGCAAGG ACCCCGCGCT TGCGGCCAGC
GCGGTCGCCT CGCGTGCCAA TGCGCGCTTC GAAAAGCACC GGGCGGGGCG GATCACCTTC
CTGCAGCCGC CGGCGATCCC CCGGCTGGGC AATGCGGCCG GGTTCAGCAT GTTCCTGCTG
GACCAGTCCG GCGGCGGAGC CGAGGCGCTG ACCCAGGCCG CCAAGGCGCT GGAACTGGCC
GCCGCCGAGG ACCCCCGCCT GCAAAGCGTC GAAAGCAGCG GCACCGAGAC CGAGGCGGCG
CTGAAGATCG ACATCGACCA GCAAAAGGCG GAAAGCCTGG GGGTCAGCCT GTCGGGCGTG
AACGCCATGC TCTCGACCAT CTTCGCCGGG ACCGAGGTGA ACGATTTCGC GCTTGGCGCG
CAGCTGCGCC CGGTGGTCGT GCAGGGGGCG GCGGCGAACC GCATGCAACC CGAGGACGTG
GACAGCTGGT ATGCCCGCAA CGCCGATGGC GAGATGGTGC CCTTTACCGC CTTCATGACC
ACCCGCTGGG AGCCGGTCGA GCCCAGCCTG TCGCGCATGG ACAGCATCGA CGCCATCGAG
ATCACCGGCC AGCAAAGCGA CAGCGCCAGT TCCGGCGTGG CGATGGCGGC CATGGAGGAA
CTGGTGGCGC AGCTTCCCGG CGGCTATGGC ACGGCCTGGA CGGGCCTGTC CTACCAGGAG
CGGCAATCGG GCAACCAGGC GCCCTGGCTT TTCGCGCTCT CGGCACTGGT GGTGTTCTTG
TCGCTTGCAG CGCTTTACGA AAGCTGGTCC ATCCCGTTCT CGGTCATGCT GGCGGTGCCG
GTGGGGGTCC TGGGCGCGGT GGTGGCGGCG CTGACCTTCG GCCAGGCCAA CGACGTCTAT
TTCAAGGTCG GCATCCTGAC CACCATCGGC CTGGCGGCCA AGAACGCCAT CCTGATCGTC
GAATTCGCAC GCGAGCTTGA ACAATCGGGC CGGGCCACCG TCGAGGCCGC GGTCGAGGCG
GCGCGGCTGC GGCTGCGGCC GATCCTGATG ACCTCGCTGG CCTTCATCCT GGGGGTGCTG
CCCCTGGCCA TCGCCACCGG CGCGGGCGCC GCGGCGCAGA ACTCGATCGG CATCGGGGTG
ATGGGCGGCA TGATCGCGGC GACCTTCCTT GGCATCTTCA TGGTCCCGGC ATTCTACGTT
ACCGTGCGGC GGCTGACCGA TAGGAGAGCC CGGACATGA
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| Protein sequence | MAQFFIHRPV FAWVLAIVTM LIGTWSLIGL PVSQYPDIAP TTIRITANYS GATARAVQNS
VTTPIEDALT GLDGLLYTVS SASTGRSVIE LTFDDSVEPV DALNEVQSKV RSVESRLPTP
VQNDGVSVTR SSSSILMVGS LVSTTGQHST IELGNLLEQV VEGPVKRTEG VGGVNVFGSG
YAMRIWMDPL RLAQFQLTPT DLTTAVAQQN STVSVGALGE QPVVAGQQFT ANITAQSQLT
SVEDFRNILL KTGEDGATVR LGDVAEVEIG QTRYGRDSRF NGMNASGFAV NLATGANAVE
TASAVRATLE GLKNALPEGV EVHIAYDTAP FVELSIEKVY HTLIEAIGLV FLVILLFLQN
WRATLIPIIA IPVVLLGTFG MLAALGYSVN TLTMFAMVLA IGLLVDDAIV VVENVERVMQ
EDGLGPVEAT EKSMGQISGA LIGIALVLSA VFLPMGFMPG STGVIYRQFS VTIITAMVLS
LLVALILTPA MCASLLRQSH GPARFAPARW FNAGFERVTR GYSATVRRSL RRPMLVMLLL
AAISYGATDL FGRMHTTFIP GEDQGVLQSR ITLTEGSTAQ QTAAVVQEIE NYMLTEEKAA
VESVFVAMGF GFSGTSQSRA MVFVKLRDFD QRKDPALAAS AVASRANARF EKHRAGRITF
LQPPAIPRLG NAAGFSMFLL DQSGGGAEAL TQAAKALELA AAEDPRLQSV ESSGTETEAA
LKIDIDQQKA ESLGVSLSGV NAMLSTIFAG TEVNDFALGA QLRPVVVQGA AANRMQPEDV
DSWYARNADG EMVPFTAFMT TRWEPVEPSL SRMDSIDAIE ITGQQSDSAS SGVAMAAMEE
LVAQLPGGYG TAWTGLSYQE RQSGNQAPWL FALSALVVFL SLAALYESWS IPFSVMLAVP
VGVLGAVVAA LTFGQANDVY FKVGILTTIG LAAKNAILIV EFARELEQSG RATVEAAVEA
ARLRLRPILM TSLAFILGVL PLAIATGAGA AAQNSIGIGV MGGMIAATFL GIFMVPAFYV
TVRRLTDRRA RT
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