Gene Pden_2717 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_2717 
Symbol 
ID4580352 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp2733238 
End bp2733921 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content68% 
IMG OID639770043 
Productlipoprotein signal peptidase 
Protein accessionYP_916497 
Protein GI119385441 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0597] Lipoprotein signal peptidase 
TIGRFAM ID[TIGR00077] lipoprotein signal peptidase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.702732 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGAGA CCGCGACCCC CAAGCCGCGG AAAAGCCCGG CGGCCCGGAA GCGGCGCTCG 
AAAAAGCCGC CGCCGCGTGT CTGGCGCAAT GTCTCGCTGG TGGCGGGATT GGTCTTTCTG
CTGGACCAGG CGCTGAAATA CCTGGTCGTG CATGTGCTGC GGCTGGACCA GCTGCGCGAG
ATCGACGTGA TCGACCCCTG GCTGAACCTG CGCATGGCCT GGAACCAGGG CATGAACTTC
GGCCTGTTCG CCAGCGATGT CGAGGTGATG CGCTGGGTGC TGATCGGGAT CGCGCTGGCC
GTCTGCCTTT GGGTCGGGAT CTGGATCGGG CGGGCCAAGC CCTCGCGGTT TGCGCAGGTT
TCGGCCGGGT TGCTGATCGG CGGGGCGCTG GGCAACGTCG TGGACCGGCT GACCTATGGC
GCGGTCGCGG ACTTCCTGAA CATGTCGCTG CCGGGCTGGC GCAACCCCTA CAGCTTCAAC
GTGGCCGACA TCGCGATCTT CCTGGGCGCG ATGGGGCTGG TGCTGCTGCC GCCGGAAAAG
AAGCCGGCGG CGAAAAGGCG CAAGACGTCT GCCAGGCCGC GCCCGGCGAA ATCCCGCGCG
CCCGACGCCC CGTCGGAGCC CGAGGGGCAG GGCGAGCTGG CGCTGGACGA CAAGACCCGT
GACGAGGCCG GCAATACGCG CTAA
 
Protein sequence
MAETATPKPR KSPAARKRRS KKPPPRVWRN VSLVAGLVFL LDQALKYLVV HVLRLDQLRE 
IDVIDPWLNL RMAWNQGMNF GLFASDVEVM RWVLIGIALA VCLWVGIWIG RAKPSRFAQV
SAGLLIGGAL GNVVDRLTYG AVADFLNMSL PGWRNPYSFN VADIAIFLGA MGLVLLPPEK
KPAAKRRKTS ARPRPAKSRA PDAPSEPEGQ GELALDDKTR DEAGNTR