Gene Pden_2461 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_2461 
Symbol 
ID4580794 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp2472753 
End bp2477666 
Gene Length4914 bp 
Protein Length1637 aa 
Translation table11 
GC content73% 
IMG OID639769790 
Productfilamentous haemagglutinin outer membrane protein 
Protein accessionYP_916244 
Protein GI119385188 
COG category 
COG ID 
TIGRFAM ID[TIGR01901] filamentous haemagglutinin family N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.489367 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.518001 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCGGGAC CGCTGGCGGC GCAGACCCTG CCCAGCGGGC CGAACGTGGT CGGCGGCAGC 
GCCAGCGTCG GCACGCCGCG CACCGGCGCC ATGCGCGTGG ACCAGCGGAG CGACCGCGCC
ATCATCGACT GGAGCAGCTT CAGCATCGGG GCCGGCGGCT CCGTCCGGGT GCATCAGCCG
GGACGTGACG CAGCGCTGCT GAACCGGGTG ACCGGAGACC GCCCGACCCG CATCGACGGT
TTTCTGGGCG CGAACGGCCA GGTCTTCGTC GTCAACCGCA ACGGCATCCT GGTCGGGCGC
GAGGGACGTA TCGCCACGGC GGGTTTCGTC GGCTCGACGC TGGACATCTC GAACGAGGAT
TTCACCGCCG GCCGGCTGCG CTTTTCCGGC GACCGGCCCG GCACGGTCGA GAATCGCGGC
CACATCGACA TCATCCCCGG CGGCTATGCC GCGCTCTTGG GCGGACGGGT CGCCAACAGC
GGCACGATCC GCGTGCCGCT GGGCACGGTG GGGCTGGGCG CGGGGCGGCG GGCGGTGCTG
AACCTTTCGG GCGACAACTT CCTGTCGGTG GCCCTGCCGC CCGCCGAGGA CGGCGAGGCC
ATGGCGCTGG TCCGGCAGCA CGGCCGGATC TCGGCCGATG GCGGCGTGAT CGAGATCGAG
GCGGCGACGG CACGCCATGC CGCGCGCCAT GCGATCAACC TCACCGGCGT GACCGAGGCG
CGCACCGTCT CGGGCCGCTC GGGCCGGGTG GTGTTGGGCG GCGGCGACGG CGGCCGGGTG
CGGGTCGCGG GCCGGGTCGA TGTCAGCGGC GGCCGACGCG CGGCGGCACC AATCACCGCC
GAACGGCCTG CGGTGCGGCC CCGGCGCGGC GGCAGCATCA CCATCACCGG CGACCGCATC
GCGCTGGAGG GCGCCGTTTT GGATGCCAGC GGCACCGGCG GCGGCGGGCT GATCCGCGTC
GGCGGCGATT ATCGCGGCAC CGGCGACCTG CCCCGGGCGC GGCGCACCAC GCTGGATGCC
AGGGCGCAAC TGCTGGCCGA CGGGATCGGC CGTGCCGATG GCGGGCGGAT CATCGTCTGG
TCGGATGCCC ATACCCGCTT TGCCGGCGGC GTCTCGGCCC GGGGCGGCAC TCAGGGCGGC
AACGGCGGCT TTGCCGAGAT ATCCAGCCGC GGCGAGTTGG CGATCCGCAG TTCCGACGTG
CGGGTCTCGG CCCCCCGCGG CCGGCCGGGC ACCGTGCTTT TCGACCCGCA GAACCTGCGC
ATCGTCGGCG AGGACAGCTA TGACCCCGAC GATCCGACGC ATGTGCTGGT GACGGATATC
TACAGCATGT TGCTGGATGC GGGGCATTAC ATCCTGTCGA CCGAGGGAGA GGGCGACGAT
GCCGGCGACC TGGTGGTCGA CACGCCGATG ACCCTGACCT TCGCCGCCGG CGCGGCCAGC
CATCTGGACC TGCGCGCCGA CAACGACCTG CTGGTCAACG CCGCGATGAG CTGGAGCGGA
CCGGGCCAGT TGTCGCTGAC CGCGGGCGCC GGCATCACCA GCATCGGCGC GCTGAGCTGG
AGCGGCGCCA CGGCGCTGAA CATGACCGCA GGCGAAAGCA TCGCGCTGAA CGCGTCGGTG
CAGGGACCGG CCGGGGCGCT GAACCTGCAA GCGCCGCTGA TCACGGCGAT GGCGGGCGTC
GCAGTGGACA GCTTCCGCCT GAACGGCGCC TCGCAATGGC GGCAGGTCGC CGCCACGCTG
CCCGGCTTTT CGGCGCGCGA CTTCGCCATA TCCGACACCG CGGGCTTCCT GCGTGCGACG
GGCGGCGCCG GGACCGCCGC CAGCCGCTAT GTCATCGCCG ATGTCTACGG GCTCCAGGGC
ATCGGCTCGG CCGGCCATGC CGGAGCGCAT TACGCCCTGG GCGCCGATAT CGCGGCGGCG
GGCACGGCCG CCTGGAACCT TGGCGCGGGG TTCCGGCCCA TCGGCAGCCG GGGGACGCCG
TTCTCGGGCA GCCTCGACGG CGCCGGGGCC GGCGGCGGCC ATGCGATCAC CGGGCTTGCG
CAGGTCGTCT CCTCGGGGCC GGGCGGGCTG TTCGGCACCA TCGCCGGCGC CACGATCCGC
AACCTGCGCG TGCTGGACAT CGACCTGAGC GCGCAGCAAG GCTTTGCCGC CGTCGCAGGC
GGCCTGGTCG GAGAGACGCA GGCCGGCGAG GCGCCGAACG TGATCGCGAA TGTGCTGGTC
ACCGGCCGGA TCGAAGCCGA GATGGGCGAG GATTCGGTCA GCAGCGCCAG CTTTGGCGGG
CTAGCCGGGG TTTTCGGCAA CGGCCGCATC ACCGGCGCGG AATCGCGCGT CACCCTGGCG
CTTTCGGGCG AGGCGGACGG CTGGGGCGAC GTGGTTCTTG CCGGCGGCCT TGTCGGGCAG
TCGCTGGGCG GGACGACGAT CACCGGCAGC CGCTATGCCG GCAGCATCGA ATCCGGCTTC
GACGGGTCCG AGGACAACAG CGAGGGCTTC GCCCCCGCCT CGCGCATCGG TGGGCTGGTC
GGGATGACCG ATGACGGCGA CAGCATCGCG GATTCAACCG CCGCCGCCCA GATCACCCAG
ACCGGCAACG GAAACTGGGT CATCGGCGGG CTGGTGGGCG AGAATGCGGG GGCGCTGACC
GGGGTCTCGG CAACCGGCGG CATCGCCCTG ACGCAGGGAG GGACAGAGAC CATCCGCCTG
CTGGCCCTTG GCGGCCTGGC CGGGACGAAC AGCGGCACCG TCTCGGATGC CTGGAGCGAT
GTGGCCATGG ACCTCGACAC CGCGGGCTAT GTCCGGGCCG GCGGACTGAT CGGCACAAAC
GAGGGCACGG TCGGCACCGC CTATGCCCTG GGCAGTCTGG GCCTTGCCCT GTCCGGCCTG
CCCGAAAGCG GCAGCATCGC CGAGATCGGC GGGCTGATCG GCGCGAATGA AGGCACGATC
GCCGATGTCT TTGCCGGCAA TGCCGTCGAC ATCTCGGGTG ATGCGGCCGT CGCGGCGGGC
GGGCTGGTCG GCTGGAATCC GGGCGAAATC GCCCGAGCCC GCGCCTCGGG CCGCCTGGGG
GTGGCGCTGG ACGGCACGGG CGGCCCGGAT GCGCCGCGCT CGGCCCTGGG CGGGCTGGCG
GGCTGGAACG ACGGCGGCAT CGCCGACGCC TATTCGCTGG CGCCCGTGAC CTATTCCGGC
AACCTGCCGG CGACCATCGG CGGGTTGGTC GGCTCGAACG CCGGCAGCAT CGAGCGCAGC
TATGCCGCGG GCCGGATCGC GGCCACCGCA ACGCCGGCCC TGCTGCGCAC CGGCGGGCTG
GTCGGGGCCG ATGACGAAGG CGAAGGCACC GGCAGCGTCG CCGTGTCGTT CTGGGACCGC
CAGACCAGCG GGCAGCAGCA ATCCGCCGGC GGCACCGGGC TGACCACGGC GCAGTTGCGC
GATACTGCGG GCTTCATGGG CCGCGCCACG GGCTGGAGCT TTACCACCAC CTGGGCGCCG
GGCGGCAATG GCGCCTATCC GCAGATCTAC AGCATCGACC CCGTGCTCTG GACCCAGCCC
ACGCCGCTGA CCGCGACCTA TGGCGACGCC CTGCCCACGC CCGGCGGCAC GGTGCATGGG
CTGGGGCGCT ATCTGTTCGG CGACCAGCCC TTGGTCGCGG GGATCTTCAG CCTGCCGGCG
GGCACGCGCA ATGCCGGGAC TTATGCCATC CAGACGGCGG GCACGGTCAC CTCGCCCGGC
GGCACCAGCT ATGACATCAT CGCCTCGGCG GCGAGCCTGA CCATCAACCG CGCGCTGCTG
ACCGTCTCGG CCGACGACCT GAGCAAGATC TATGGCGAGC GGCTGCTGTT CTCGACCGGC
GATGCCACCG CGGCCGGGCT GCGCCATGAC GACCGGCTGA CCGCGGTCGA TCTGGCCAGC
GCGGGCGCCG AGGCCGGGGC CTGGGTCGCC GGCACGCCCT ATGCCATCAC CGCAGGCGGA
GCCCGGATCG GCGGCGCGGA CGGCGATGCG ACCGGCAATT ACATCATCAG CTATGCCGAG
GGCGCGCTGG AGGTGGTGCC GCGCAGCATC ATCATCGGCG CGCGCGACAG CCTGGCCCGG
TTCGGCACCG CGCCGCTATT GGACTGGGCG CTGACCGGCG GAAGCCTGGC CGAGGGCGAC
ACGATCACCG GCGTCCTGCT GGCCAGCGAT GCCACGCCGG CCAGCCCGCC CGGCCTTTAT
GGCATCACCG CCTCGGATGC GCGGATGCTG GACGGGGCCG AGGCGAACTA TGCCATCGCC
TATGCGCCGG GAACCTTGCA GATCGTCAAC CCGGCCGCGA CCCGGGGGAT CCCGATCCCG
CAGAACACCT TGCCGGGAAC GGCGCTGCCG AACCCGACGG ACGGCCCGGT GCCCTTCCCG
ATCACGGTGG CCGGCACGGC TTCGGTGCTG CCGGGCGGGC CGCCGCCGGT CACCTCCGGC
CCGCAGGACG ACGGGCTGAC CCGGCTGGCC GCATTGTCGG ACGAGGTCTC GCAGATGATC
GACGCCTGCA GCCAGCACGA GGGCCAGGCC GAGGACATGC TGGCCTGCCT GTCGCGGGCG
CTGGACCGCT ATTCCAGCGC GCTGGATGAG CTTTCGGCCG AACTGCCGCC CTCGATGCAG
ACGGTCTCGG CCATCCTGCG CCAAGCCAGC GCGGATATCG GCGCGGCGCG CAGCCGGGCG
CTGGACCGGC TGGCCACGGC GGGCAGCGAG GCCGAGCGCC GCGCCATCCG CCGCGACGCC
CTGCGCGAGG CCAGCCGGAC GATGTCGAAC GCCCGGGCCG AAATCGTCAA GCAGATCGAA
TTGCTGCGGG TCGAAGACCC CGAACTGGCC CGCACCCATG CCCGGCAGGA GGGGCTGATC
CTTGCCACGG TCGAGAAAGC CGATGCCGTC CTGGTGCGCG CGGTCGGGCT TTAG
 
Protein sequence
MPGPLAAQTL PSGPNVVGGS ASVGTPRTGA MRVDQRSDRA IIDWSSFSIG AGGSVRVHQP 
GRDAALLNRV TGDRPTRIDG FLGANGQVFV VNRNGILVGR EGRIATAGFV GSTLDISNED
FTAGRLRFSG DRPGTVENRG HIDIIPGGYA ALLGGRVANS GTIRVPLGTV GLGAGRRAVL
NLSGDNFLSV ALPPAEDGEA MALVRQHGRI SADGGVIEIE AATARHAARH AINLTGVTEA
RTVSGRSGRV VLGGGDGGRV RVAGRVDVSG GRRAAAPITA ERPAVRPRRG GSITITGDRI
ALEGAVLDAS GTGGGGLIRV GGDYRGTGDL PRARRTTLDA RAQLLADGIG RADGGRIIVW
SDAHTRFAGG VSARGGTQGG NGGFAEISSR GELAIRSSDV RVSAPRGRPG TVLFDPQNLR
IVGEDSYDPD DPTHVLVTDI YSMLLDAGHY ILSTEGEGDD AGDLVVDTPM TLTFAAGAAS
HLDLRADNDL LVNAAMSWSG PGQLSLTAGA GITSIGALSW SGATALNMTA GESIALNASV
QGPAGALNLQ APLITAMAGV AVDSFRLNGA SQWRQVAATL PGFSARDFAI SDTAGFLRAT
GGAGTAASRY VIADVYGLQG IGSAGHAGAH YALGADIAAA GTAAWNLGAG FRPIGSRGTP
FSGSLDGAGA GGGHAITGLA QVVSSGPGGL FGTIAGATIR NLRVLDIDLS AQQGFAAVAG
GLVGETQAGE APNVIANVLV TGRIEAEMGE DSVSSASFGG LAGVFGNGRI TGAESRVTLA
LSGEADGWGD VVLAGGLVGQ SLGGTTITGS RYAGSIESGF DGSEDNSEGF APASRIGGLV
GMTDDGDSIA DSTAAAQITQ TGNGNWVIGG LVGENAGALT GVSATGGIAL TQGGTETIRL
LALGGLAGTN SGTVSDAWSD VAMDLDTAGY VRAGGLIGTN EGTVGTAYAL GSLGLALSGL
PESGSIAEIG GLIGANEGTI ADVFAGNAVD ISGDAAVAAG GLVGWNPGEI ARARASGRLG
VALDGTGGPD APRSALGGLA GWNDGGIADA YSLAPVTYSG NLPATIGGLV GSNAGSIERS
YAAGRIAATA TPALLRTGGL VGADDEGEGT GSVAVSFWDR QTSGQQQSAG GTGLTTAQLR
DTAGFMGRAT GWSFTTTWAP GGNGAYPQIY SIDPVLWTQP TPLTATYGDA LPTPGGTVHG
LGRYLFGDQP LVAGIFSLPA GTRNAGTYAI QTAGTVTSPG GTSYDIIASA ASLTINRALL
TVSADDLSKI YGERLLFSTG DATAAGLRHD DRLTAVDLAS AGAEAGAWVA GTPYAITAGG
ARIGGADGDA TGNYIISYAE GALEVVPRSI IIGARDSLAR FGTAPLLDWA LTGGSLAEGD
TITGVLLASD ATPASPPGLY GITASDARML DGAEANYAIA YAPGTLQIVN PAATRGIPIP
QNTLPGTALP NPTDGPVPFP ITVAGTASVL PGGPPPVTSG PQDDGLTRLA ALSDEVSQMI
DACSQHEGQA EDMLACLSRA LDRYSSALDE LSAELPPSMQ TVSAILRQAS ADIGAARSRA
LDRLATAGSE AERRAIRRDA LREASRTMSN ARAEIVKQIE LLRVEDPELA RTHARQEGLI
LATVEKADAV LVRAVGL