| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2413 |
|---|
| Symbol | |
|---|
| ID | 4580747 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 2411014 |
|---|
| End bp | 2413311 |
|---|
| Gene Length | 2298 bp |
|---|
| Protein Length | 765 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639769742 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_916197 |
|---|
| Protein GI | 119385141 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.350192 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.157605 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGCGC CGGTTTTCCG GCGCGCCTTC ACAGCTTTTC CATTGCCTGG AACCATTATG
GATACTCGCG AGACTGCTTC GGCAGATCAG CCCATGACCG CCTCGCTCGA TGCGCCGGGT
TGGGTCACCT GCCTTGGCCA CGTCGCCCGG CACTATGGAA TTTCCTTTTC AGCGCAATCC
GCCCTGAACA GTGCGGCATG GAATGCCGGG AAACCGCAGG CCGACCAACT GGCGCTTCTG
GGTCGCCATC TGGGGTTGCG GGTTCGGCTT TTTGCGCCGG AGAAACTGGA ACTGACCGCC
TGGCGCCTGC CGGTGGTCTG CGAACTCAAC GACGGCACCA TCGGGATCGT CTCCTCGCTC
AGCAAGTCGG GTGAAGCGGG GCTGCTTCTG GCGGGCGAGC AGGACGCCAC CATCGTCGCC
GTCGCCGACC TCGTGCCTCG CATCCGCCAG CTTGTGATCG CGCGTCCGCT GCGGACGCTG
GTGGACGAAC GCGTCGACAA TTACATCGCC CCTTATCGCG AAGGCTGGCT GCGCCGCTTC
GCCCTGCCGG ATCTGCGGCC CTATGGCCAT GTCATGATCG CGACCCTGAC GGCGAATGCC
CTTGGGCTGA CCGGGATCAT CTTTTCGAAG CAGGTCTACG ACCGGGTGGT TCCGGCGGAA
TCCTTCAACA CGCTCTATGT GCTGTTCATC GGCGTCATGA TGGCGGCGCT GTTCGATTTC
ATCATGCGGC GGACGCGCAC CAAGATCGTC GACATGCTGG GCAAGCGGGC CGATATACGG
CTTTCGGACC AGGTGTTCGG GCATGCGATG CGGGTTCGGA ACTCGGCGCG GCCGAAGTCC
ACCGGCTCAT TCGTGGCGCA GCTACGGGAT CTGGAATCGC TGCGCGAGAT GCTGACCTCG
ACCACGATCT CGGTCCTGGC CGACCTGCCG TTCTTTTTCA TGTTCCTGTT CGTCTTCTGG
TATATCGGCG GCAGTCTCGC GCTGGTTCCG GCGGTGGCAG TGCTCGCGAT GATCCTGCCG
GGCCTGCTCG TGCAGAAGCG GCTCAATCGC TATGTCAACG AAGGCATGCG CGAGGCCTCG
ATGCGCAACG CCATGTTGAT CGAGGCGGTG CAGGGTATCG AGGACATCAA GTCGCTCCAG
GCCGAGGATC GCTTCCAGCA GCGCTGGAAC CATTTCAACG CCGTGGCCGC CGACGCCCAG
CTCAAGCAGC GCAACATCAC CAGCGCCCTG CAAGCCTGGG CACATGCGGT GCAGATGAGC
GTCTTTGCGA CCGTCGTCTT TGTCGGAGCG CCGAAGGTGA TCGCCGGCGA CATCACTACC
GGGACGCTGG TTGCCTGCTC CATTCTCGGC TCGCGCATGA TGGGGCCAAT GGCGCAGTTC
AGCCAGATAT TCAGCCGCTT GCAGCAGGCC AAGCTCAGCT ATGAAAGCGT GGATGCGGTG
ATGCGCATGC CGGTGGACCA TCCCGACCGG GAAAGCCGGA TCGGCGTGGC GATGCTTCTG
GGCGGCTATC ACCTGCGGGG AGCGGAGTTC TTTCACGATC CGGGCAAGGC CCGCTCGGTT
CTGTCGATCG AGGACCTGAA GATCGCACCG GGCGACAAGG TCGCGGTTCT GGGCCGGATC
GGCGCGGGCA AGTCGACGCT GCTGCATGCA CTGGCCGGGA TGATCGAGCC GGGCGAGGGC
GAGGTTTTGC TGGATGACAT GGCGCTGGGT CAGATCGACC CTTCGGACCT GCGCCGCGAT
GTCGGCCTGC TGACCCAGGA TTCCCGGCTT TTCCACGGCA CGATCCGCGA CAATCTCATG
CTGGGGGCGC CGCAGGCGAC CGATGCCGAG ATTCTGGAGG CGCTGAAGAT CTCGGGGGCC
ATCGAATTCG TCAGCCGCAT GGCGCAGGGC CTCGACTATC CGCTGCTGGA GGATGGGCGC
GGGTTGTCCG GGGGCCAGCG TCAGGCCCTG ATGCTGGCCC GGCTGATCCT GCGCAACCCG
CGCATCGTGC TGCTGGATGA GCCGACCGCC TCGATGGACG ATCAGACCGA ACGCACCCTG
ATCGCCGCGC TCAAGGAATG GATGGTCGGA CGGACCGTGG TTCTGGCCAC GCATCGGATG
CGCGTTCTGG ATCTGGTCGA CCGCGTGGTC GTCGTCGACA GGGGGAAGGT CTCGTTCGAC
GGCGAGAAGG ACGCCTTCCT GCGCCGCATG CGCGCCGGCG GCCGCCCGGC ACCCGTTCCC
CGGCCCAAGC TTGTCACGGG CAAGCCGCCC GCGGCGGCCC CGGTGCCTGC CGCGGTCGAT
CCGGTGCGGG AGGAGTGA
|
|---|
| Protein sequence | MGAPVFRRAF TAFPLPGTIM DTRETASADQ PMTASLDAPG WVTCLGHVAR HYGISFSAQS
ALNSAAWNAG KPQADQLALL GRHLGLRVRL FAPEKLELTA WRLPVVCELN DGTIGIVSSL
SKSGEAGLLL AGEQDATIVA VADLVPRIRQ LVIARPLRTL VDERVDNYIA PYREGWLRRF
ALPDLRPYGH VMIATLTANA LGLTGIIFSK QVYDRVVPAE SFNTLYVLFI GVMMAALFDF
IMRRTRTKIV DMLGKRADIR LSDQVFGHAM RVRNSARPKS TGSFVAQLRD LESLREMLTS
TTISVLADLP FFFMFLFVFW YIGGSLALVP AVAVLAMILP GLLVQKRLNR YVNEGMREAS
MRNAMLIEAV QGIEDIKSLQ AEDRFQQRWN HFNAVAADAQ LKQRNITSAL QAWAHAVQMS
VFATVVFVGA PKVIAGDITT GTLVACSILG SRMMGPMAQF SQIFSRLQQA KLSYESVDAV
MRMPVDHPDR ESRIGVAMLL GGYHLRGAEF FHDPGKARSV LSIEDLKIAP GDKVAVLGRI
GAGKSTLLHA LAGMIEPGEG EVLLDDMALG QIDPSDLRRD VGLLTQDSRL FHGTIRDNLM
LGAPQATDAE ILEALKISGA IEFVSRMAQG LDYPLLEDGR GLSGGQRQAL MLARLILRNP
RIVLLDEPTA SMDDQTERTL IAALKEWMVG RTVVLATHRM RVLDLVDRVV VVDRGKVSFD
GEKDAFLRRM RAGGRPAPVP RPKLVTGKPP AAAPVPAAVD PVREE
|
|---|
| |