| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2407 |
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| Symbol | |
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| ID | 4579262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 2400950 |
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| End bp | 2404012 |
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| Gene Length | 3063 bp |
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| Protein Length | 1020 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639769736 |
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| Product | Mur ligase middle domain-containing protein |
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| Protein accession | YP_916191 |
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| Protein GI | 119385135 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase
[COG2843] Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.29011 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAATC GCGACGATCA GACCGCGAAA CCCGTCACCA TAGCCTGGGG CGGCGATGTG
AACATCGGGC GGCGGTTTCA TTATCGCTTC CGGCACGCGC ATGGGCGCGA TGCGCTGGCC
AGGATCATGC CGCTGGTCGA GGCCGATCTA AGGATCGTGA ACCTTGAATG TGTCGTTGCG
ACCTGCGGGG AGGAATGCGT CGACAAGGGG GAGCGTTCTT CCTACTACTT CCGGGCCCGT
CCCGAGATGT TGGAGACCTT GCTGCGGGGC GGCGTCGATC TGGTCACGAC CGCGAACAAC
CATAGCGGAG ACTATGGCCC GGTGGCTTTG GTCGAACAGG CTGCTTGGCT CGACATGGCC
GGAATCGGCC ATGCTGGCGC CGGCCGCAAC CGGGAGGAGG CGTTCCGCCC GGTGATCCGC
CGTGCCGGGC ATCTCGATGT TGCCCTGTTC GCGCTGGATG CCACGCAGCA AAGCTTCGCG
GCCGGCGAGA GCAGCCCCGG AACCGCCTGG CTCGATCCGG CGAAACCGGC GGAATGGGCC
GCGCTCATGG CGCCACGGAT CGCCGCCGCA CGCGAGCTGG CCGATATCGT TCTGGTGGCG
ATCCATTGGG GCCGGAACAA TCTTCACCAG CCGGATGCGC TGGAGATCGC TGGCGGTCAT
GCGTTGATCG ATGCCGGGGC CGACGCGGTG CTTGGGGCAT CGGCGCATCT CTTGCAGGGG
GTGGAGGTCT ACAAGGATCG CCCCATCCTG CACGATGCCG GGGATCTCCT GTTCGACGCG
CTTACGCGTG GCGACGAGGA CAGCGGGATT TTCACGCTCG AGATCGACCA TCGCGGCGTA
AGCCGGGTCG CGTTCCTGCC CCTGGAGGTT GGGTTCTGTC GCACGGTTCC GCTTGCCCAG
CCGGCGGCGA CGGAGGCCGT CCAGAGGTTC GCGGGCAAAT GTGCGGCGCT TGGCACCCGA
ATGGAGATCG GCGAGGACGG GCGCGCGCAT CTCGACCTCA CTCCGCCCGA CAGGATCGCC
GGCCCTTCGC GCCCCCCGGC CGCGCCGGTG GCACGCCGGC TCCCCGCCGC GCTCGGAGAG
CCGCGGCCGG AATGGCTTGC CGATGACGTC CCGTCGGACG CGTTGTTGCC CGCACCGCTG
CGGATCGGGG CGCTGGAGCT TCTGGGCCTG CGGGTTTCTC CCGAACGGCT GGACCGGATT
GGGCTGATCG CGGTTGAATC CTGGTGGCGG CTGGTCGAGC CTGTGGATTG CGACTGGCGT
ATCGATTTCC GTGCCGATCC CGAAAAGCCC GGGCCGATAG GAGCTTGGGG GCTTGGCTGC
TCGCATGATC CCTGTGACTG GATGTGGCCG GTCAGCCGGT GGGAGCCGGG CCGGATTTAT
CGCGACTTCT ATACCCTCCG GCCGTCTTCC GTGCGCGATT GGGTGGATGA GACGCTGATG
CTCTCGGTGG GGCTGGTCAG CCACTTGGGC AAGACTGAGC GGCATGTCCT GCCAAAGCAG
ATCCGGTTCG AGTTGTCGCC AAAGGCCGGG TTCGCGGTTC TGCGCTCCAA TCCGCCGCGC
TACGACGTGC CGCCGCCCGA CAAGATCAGC CCGACGCCGG AAATTCTCTG GACTGCCGAG
CAACTGGAAC AGGTCACGGG GGGGAAGTGG TTGGTGCCGC CCTCGGATGC CTGGTTCGTT
TGCTCGGTCA CGCATAAGTC CCGGCAGCTC GACAACTGGA ACGTGTCTGC TCCGAAACTG
TTGGCGGTGA TCGACAGGCG CATGGCGATG AAGCACGAGC TGTCCGACTT CACCGCCGGT
AAGCACTGGG ATATTCACGA CCAGCTTCCT GCCCTGCAAG GCAGGATCGC CGCTGCGATG
GTGGCACGGC CGGTGGAGGG GCTGGCACCG GGCTTTCCGC TGCTTCAAGT GCCTGATCCG
CTTCATGCGC TGATCCAGCT TGGTGTCGCT GGTCGGAACC GGCTGAAGGG CCATGTGGTC
GCGGTGACGG GAAGCGCAGG CAAGACATCG CAAAGCCTGA TGTTGATGGC GGCCATGGCC
AAGGACCGCA AGGTCATCGG CAACTCGGCC CTGAACTATA ATTCACGGGT CGGCATCCTG
CATCTGCTGG CAAACACTCC GCCATCGACG GATCTGGTGG TGGTCGAGGC GGCGGTGACG
GCGATCAATG CACCGAAATT CCAGAACATC CGGCTGATGC GCCCCGATAT CGGCCTCGTC
ACCAATATCG CGCCCTCCCA CATGCAGAGA TCGGGGCAGG GGTTGGAGAC GGTCGCCCGC
CGCAAGGCCA ATCTGGTCGA AGGGATCGCG CCCGGCGGCA CCTTGCTGTT GAACCGCGAG
ATAGATTTCT ACGACGTTTT CCTTGATCGC GCCAAGCAGC GCGATCTGTG TGTCGTGACC
TTTGGTGCGG GTGAAGACGC GGATCTGCGC CTTGTCGGAT ATGATCAGGC GACGGGGCGG
GTCAAAGCCC GCCTGCCCGG AGGCGGGCTG CTCGATTACC GCATCTCGGC TCCGGGCAGG
CATATGGCGA TGAATAGCTT GGCCTGTATC GGGGTGCGCC TCTTGCTGGG CGGGGATCTG
GCGCCCTTCC TGGAAGGGCT GGAAGAATTC CAGCCGGCCG AGGGACGGGG CGCGGTTTCC
CGGGTCGAGT TCGAGGGCTG TCCGCTGACG GTCGTCGACG ATTCCTATAA TGCGAACCCA
GTCTCGATGC AGGCCGCGCT TTCGACCTTT GCCGGCATGA AGGTGGCCGG GCGCCGGATC
CTGATCCTCG GCGACATGGC GGAGCTTGGC AAGGACGCCT CGCGTTATCA CCGCGGACTT
GCGGCGCAGA TCCTGAAGAT CAGGCCGGAC GAGGTGCTTT TATGTGGTCC GCTGATGCAG
GAGCTTTGGG ATGAGCTGTC GAAATCCGGG GCCGGGCGGG TCGATGGCGC GCATTATCCC
CGGGTGGAGG TTTTGCTTTC AAATCTCGCC GGCCATCTGC GGTCGGGGGA CACCGTTCTT
CTCAAGGCGT CGAATTCCGT CGGCCTTGGG CGTATCATGG GCCGGTTTGT CAAACACGGT
TAG
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| Protein sequence | MMNRDDQTAK PVTIAWGGDV NIGRRFHYRF RHAHGRDALA RIMPLVEADL RIVNLECVVA
TCGEECVDKG ERSSYYFRAR PEMLETLLRG GVDLVTTANN HSGDYGPVAL VEQAAWLDMA
GIGHAGAGRN REEAFRPVIR RAGHLDVALF ALDATQQSFA AGESSPGTAW LDPAKPAEWA
ALMAPRIAAA RELADIVLVA IHWGRNNLHQ PDALEIAGGH ALIDAGADAV LGASAHLLQG
VEVYKDRPIL HDAGDLLFDA LTRGDEDSGI FTLEIDHRGV SRVAFLPLEV GFCRTVPLAQ
PAATEAVQRF AGKCAALGTR MEIGEDGRAH LDLTPPDRIA GPSRPPAAPV ARRLPAALGE
PRPEWLADDV PSDALLPAPL RIGALELLGL RVSPERLDRI GLIAVESWWR LVEPVDCDWR
IDFRADPEKP GPIGAWGLGC SHDPCDWMWP VSRWEPGRIY RDFYTLRPSS VRDWVDETLM
LSVGLVSHLG KTERHVLPKQ IRFELSPKAG FAVLRSNPPR YDVPPPDKIS PTPEILWTAE
QLEQVTGGKW LVPPSDAWFV CSVTHKSRQL DNWNVSAPKL LAVIDRRMAM KHELSDFTAG
KHWDIHDQLP ALQGRIAAAM VARPVEGLAP GFPLLQVPDP LHALIQLGVA GRNRLKGHVV
AVTGSAGKTS QSLMLMAAMA KDRKVIGNSA LNYNSRVGIL HLLANTPPST DLVVVEAAVT
AINAPKFQNI RLMRPDIGLV TNIAPSHMQR SGQGLETVAR RKANLVEGIA PGGTLLLNRE
IDFYDVFLDR AKQRDLCVVT FGAGEDADLR LVGYDQATGR VKARLPGGGL LDYRISAPGR
HMAMNSLACI GVRLLLGGDL APFLEGLEEF QPAEGRGAVS RVEFEGCPLT VVDDSYNANP
VSMQAALSTF AGMKVAGRRI LILGDMAELG KDASRYHRGL AAQILKIRPD EVLLCGPLMQ
ELWDELSKSG AGRVDGAHYP RVEVLLSNLA GHLRSGDTVL LKASNSVGLG RIMGRFVKHG
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