Gene Pden_2406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_2406 
Symbol 
ID4579261 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp2399885 
End bp2400790 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content59% 
IMG OID639769735 
ProductD-alanine--D-alanine ligase 
Protein accessionYP_916190 
Protein GI119385134 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes 
TIGRFAM ID[TIGR01205] D-alanine--D-alanine ligase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.392221 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCCGT TCGTTGCCGT GTTGATGGGA GGCACTTCCT CGGAGCGCTC CGTCAGTCTT 
TCATCTGGAC ATGCATGTGC GGAAGGCTTG GCCAGGGCGG GTTACCGTGT GGCACGGGTC
GAGGTGCGGG ACGATATCGC GGAAAAGCTG CTGCAAATTC GCCCAAGCGT CGTCTTCAAC
GCATTGCACG GAACCGGCGG CGAGGATGGC GCGGTCCAGG GATTGCTGGA AAATCTTGGG
ATTCCCTATA CCCATTCCGG AGTGATGGCC TCGGCGCTTG CAATGCACAA GATCAATGCC
AAGCACGTTG CCGCCGCGCA TGGCGTTCCG GTGGCCGAGT CCATCGTGGT TTCCGCTGCC
GATGCGAGTG CTTCGCATGT GATGCAGCTG CCTTATGTCC TGAAGCCCGT TGCGGATGGG
TCCTCTTGCG GGGTTCATAT CGTGCGCAGC GGAGAAGCAC CGCCGCAACT GGCTACGAAC
GAGGCGGAAT CGGCCGATGT CATGGCCGAA CGCTATGTTC CCGGCAGGGA GCTGACTTGC
GCGGTGCTGG GCGGAGAGGC GCTGGGTATC ATCGAAATCG TCCCCAAGGA CGGCGCATGG
TATGATTTCA GCGCCAAATA CGAGATCGGC GGTTCACGAC ATATTTGTCC AGCCGTCTTG
CCCCCGGATA TCGAGGAGAA AATCCTGCGA TATTCCGAGA TTGCACATCG GGCGATCGGC
TGCCGGGGCG TGACGCGCTC AGACTTCCGC CATGACCCGG ATACTGGAGA ACTCATCTGG
CTTGAGATCA ACACCCAGCC GGGGATGACA CCGACCTCGC TTTTGCCCGA GATTGCAGCA
CATCACGGCC TCACATTCGA GAAACTTGTC TCATGGATTG TCGAGGATGC GTCATTGCGG
CGCTGA
 
Protein sequence
MDPFVAVLMG GTSSERSVSL SSGHACAEGL ARAGYRVARV EVRDDIAEKL LQIRPSVVFN 
ALHGTGGEDG AVQGLLENLG IPYTHSGVMA SALAMHKINA KHVAAAHGVP VAESIVVSAA
DASASHVMQL PYVLKPVADG SSCGVHIVRS GEAPPQLATN EAESADVMAE RYVPGRELTC
AVLGGEALGI IEIVPKDGAW YDFSAKYEIG GSRHICPAVL PPDIEEKILR YSEIAHRAIG
CRGVTRSDFR HDPDTGELIW LEINTQPGMT PTSLLPEIAA HHGLTFEKLV SWIVEDASLR
R