Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_2406 |
Symbol | |
ID | 4579261 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | + |
Start bp | 2399885 |
End bp | 2400790 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 639769735 |
Product | D-alanine--D-alanine ligase |
Protein accession | YP_916190 |
Protein GI | 119385134 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.392221 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCCGT TCGTTGCCGT GTTGATGGGA GGCACTTCCT CGGAGCGCTC CGTCAGTCTT TCATCTGGAC ATGCATGTGC GGAAGGCTTG GCCAGGGCGG GTTACCGTGT GGCACGGGTC GAGGTGCGGG ACGATATCGC GGAAAAGCTG CTGCAAATTC GCCCAAGCGT CGTCTTCAAC GCATTGCACG GAACCGGCGG CGAGGATGGC GCGGTCCAGG GATTGCTGGA AAATCTTGGG ATTCCCTATA CCCATTCCGG AGTGATGGCC TCGGCGCTTG CAATGCACAA GATCAATGCC AAGCACGTTG CCGCCGCGCA TGGCGTTCCG GTGGCCGAGT CCATCGTGGT TTCCGCTGCC GATGCGAGTG CTTCGCATGT GATGCAGCTG CCTTATGTCC TGAAGCCCGT TGCGGATGGG TCCTCTTGCG GGGTTCATAT CGTGCGCAGC GGAGAAGCAC CGCCGCAACT GGCTACGAAC GAGGCGGAAT CGGCCGATGT CATGGCCGAA CGCTATGTTC CCGGCAGGGA GCTGACTTGC GCGGTGCTGG GCGGAGAGGC GCTGGGTATC ATCGAAATCG TCCCCAAGGA CGGCGCATGG TATGATTTCA GCGCCAAATA CGAGATCGGC GGTTCACGAC ATATTTGTCC AGCCGTCTTG CCCCCGGATA TCGAGGAGAA AATCCTGCGA TATTCCGAGA TTGCACATCG GGCGATCGGC TGCCGGGGCG TGACGCGCTC AGACTTCCGC CATGACCCGG ATACTGGAGA ACTCATCTGG CTTGAGATCA ACACCCAGCC GGGGATGACA CCGACCTCGC TTTTGCCCGA GATTGCAGCA CATCACGGCC TCACATTCGA GAAACTTGTC TCATGGATTG TCGAGGATGC GTCATTGCGG CGCTGA
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Protein sequence | MDPFVAVLMG GTSSERSVSL SSGHACAEGL ARAGYRVARV EVRDDIAEKL LQIRPSVVFN ALHGTGGEDG AVQGLLENLG IPYTHSGVMA SALAMHKINA KHVAAAHGVP VAESIVVSAA DASASHVMQL PYVLKPVADG SSCGVHIVRS GEAPPQLATN EAESADVMAE RYVPGRELTC AVLGGEALGI IEIVPKDGAW YDFSAKYEIG GSRHICPAVL PPDIEEKILR YSEIAHRAIG CRGVTRSDFR HDPDTGELIW LEINTQPGMT PTSLLPEIAA HHGLTFEKLV SWIVEDASLR R
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