| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2247 |
|---|
| Symbol | |
|---|
| ID | 4579301 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 2248771 |
|---|
| End bp | 2250009 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639769577 |
|---|
| Product | NADH dehydrogenase subunit D |
|---|
| Protein accession | YP_916035 |
|---|
| Protein GI | 119384979 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7 |
|---|
| TIGRFAM ID | [TIGR01962] NADH dehydrogenase I, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0299939 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.120974 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGGCG ACATCCGCAA GAACAGCTAT GACGACGGCT CGATGGACGC CCTGACCGGC
GAGCAGAGCA TTCGCAACTT CAACATCAAC TTCGGCCCGC AGCACCCGGC CGCCCATGGC
GTGCTGCGCA TGGTGCTGGA GCTGGACGGC GAGATCGTCG AGCGCGCCGA TCCGCATATC
GGCCTGCTGC ACCGCGGCAC CGAGAAGCTG ATGGAAAGCC GCACCTATCT GCAGAACCTG
CCCTATCTGG ACCGGCTGGA CTATGTGGCG CCGATGAACC AGGAACATGC CTGGTGCCTG
GCCATCGAGC GGTTGACCGG CACGGTGATC CCGCGCCGCG CCAGCCTGAT CCGGGTGCTC
TATTCCGAGA TCGGCCGCAT CCTGAACCAC CTGATGGGCG TCACCACGGG CGCCATGGAC
GTGGGCGCGC TGACCCCGCC GCTCTGGGGG TTCGAAGCGC GCGAAGAACT GATGATCTTT
TACGAGCGCG CTTGCGGGGC GCGGCTGCAT GCCGCCTATT TCCGCCCGGG CGGGGTGCAT
CAGGACCTGC CGCCCGACCT CCTGGACGAC ATCGAGGAAT GGTGCGAGCG CTTCCCGAAG
CTGGTCGACG ACCTCGACAC GCTCCTGACG GAAAACCGCA TCTTCAAGCA GCGCCTGGTC
GATATCGGCA TCGTGACCGA GGCCGACGCG CTGGACTGGG GCTATACCGG CGTGATGGTG
CGCGGCTCGG GCCTGGCCTG GGACCTGCGC CGTTCGCAGC CCTATGAATG CTATGACGAA
TTCGACTTCC AGATCCCGGT GGGCAGGAAC GGCGACTGCT ACGACCGCTA TCTGTGCCGC
ATGGCCGAGA TGCGCGAATC CTGCAAGATC ATGCAGCAGG CGGTGCAGAA GCTGCGCGCC
GAGCCGGCGG GCGACGTGCT GGCCCGCGGC AAGCTGACCC CGCCCAGGCG CGCCGAGATG
AAGCGCGACA TGGAAAGCCT GATCCACCAC TTCAAGCTTT ACACCGAAGG CTTCAAGGTT
CCGGCGGGCG AGGTCTATGC CGCCGTCGAG GCGCCCAAGG GCGAGTTCGG CGTCTATCTG
GTCGCCGACG GCACCAACAA GCCCTGGCGT GCCAAGCTGC GGGCGCCGGG TTTTGCGCAT
CTCCAGTCGA TCGACTGGAT GTCGCGCGGC CACATGCTGG CCGACGTTCC GGCGATCATC
GCCACGCTCG ACATCGTTTT CGGAGAGGTT GACCGCTGA
|
|---|
| Protein sequence | MDGDIRKNSY DDGSMDALTG EQSIRNFNIN FGPQHPAAHG VLRMVLELDG EIVERADPHI
GLLHRGTEKL MESRTYLQNL PYLDRLDYVA PMNQEHAWCL AIERLTGTVI PRRASLIRVL
YSEIGRILNH LMGVTTGAMD VGALTPPLWG FEAREELMIF YERACGARLH AAYFRPGGVH
QDLPPDLLDD IEEWCERFPK LVDDLDTLLT ENRIFKQRLV DIGIVTEADA LDWGYTGVMV
RGSGLAWDLR RSQPYECYDE FDFQIPVGRN GDCYDRYLCR MAEMRESCKI MQQAVQKLRA
EPAGDVLARG KLTPPRRAEM KRDMESLIHH FKLYTEGFKV PAGEVYAAVE APKGEFGVYL
VADGTNKPWR AKLRAPGFAH LQSIDWMSRG HMLADVPAII ATLDIVFGEV DR
|
|---|
| |