Gene Pden_2166 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_2166 
Symbol 
ID4579983 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp2168202 
End bp2170298 
Gene Length2097 bp 
Protein Length698 aa 
Translation table11 
GC content69% 
IMG OID639769496 
Productgeneral secretion pathway protein E 
Protein accessionYP_915954 
Protein GI119384898 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1215] Glycosyltransferases, probably involved in cell wall biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCGCA TCGTCCCTAT CAGGCCCTTC GAAGGCATAC CTGTCCTGGC GGCCCTGCCG 
GACCCCGCCG AGACGGTCGT GTCGGCCCGC GACCTGCGGC CGCTCGGCCA GATCCTGATC
GAGGACGGCG CAGTCGACCC GCGCAACCTG TTCAAGGCGC TGGTCATGCG CCAGCGCCAG
TCGGCACGGC TGGGCGAGAT CCTGCTGGCG AACGGCTGGG TGCGGGAAGA GGCGCTGATC
CGCGCCCTGT CCCGGCAATG GCGCGCCAGC GTGCTGGACC TGAAGGCGCT GCCGCCCGAT
CCGCGCCTGG TCGATGCGAT GGGGGCGCAG CTTTGCCTGG CCGAGGGGGC GGTGCCCTGG
CGGCGCGTCG GCGGCGTGAC CTTCATCGCC ACCGCCCGGC CAGAAGGATT CCAGGCGTTG
CAGGACCGCC TGCCCCAGGA TTTCGGCGCG GTGCGCATGT TGCTGTGTTC GGAAAACGCC
GCGCGCGAGG CGATCCTGGC CCTGCGCCGC ACCGCGCTGA TCCGCCAGGC TGAAACCCGC
GTTCCCGCCC ATGAAAGCTG CCGCACCCGC AACGAGCGCC GCTTCGGCCG AATCGCAGTG
ATCCTGATCG CGGCAACGGT GCTGGGGTTG CTGCTGGCAC CGATCGCGGT GATCGCCTTG
CTGACGGGTT GGACGGTGCT GACGCTGATC GCCTCGGCCG CGTTGAAGCT GCTCTCCTTT
GCCGCCATCC TGCGCCGACA CCGCCGGGAC CGCACCAAGG CCGAGGCCAT GGCGCGCGAT
GCGATCCCGC CGCCCGAGAT GACGGCACCG CTGCCGGTGA TCTCGGTCAT GGTGCCGCTG
TTCGCCGAGG CCGATATCGC CGAAAAGCTG ATCGGCCGGC TGTCGCGGCT GGACTACCCG
CGCGAGTTGA TGGACATCCT GATCGTGGTC GAGGAAACCG ACAGCGTCAC CTGCGCGGCG
CTGGAGGACG CCCGTCTGCC CCGCTGGCTG CGGGTCGTGA AGGTGCCGGA CGGGCCGGTG
CGCACCAAGC CGCGGGCACT GAACTATGCG CTGAACTTCT GCCGCGGCTC GATCATCGGG
GTCTGGGATG CCGAGGACCG GCCCGAGCCC GGCCAGTTGC TCAAGGTCGC ACGCGGCTTT
CATTTCGCGC CGCCCGAGGT GGTCTGCCTG CAAGGCGTGC TGGACTATTA CAACCCGCGC
ACCAACTGGC TGGCGCGCGC CTTTACCATC GAATACGCCT CGTGGTTCCG TGGCACGCTG
GCCGGGGCGG CGGCGCTGGA TCTGGTGGTG CCGCTGGGGG GAACCACGCT GTTCTTCCGC
CGCGAGGCAC TGGAAGAGGT CGGCGCCTGG GACGCCTGGA ACGTTACCGA GGATGCCGAC
CTGGGCGTGC GCCTGACCCG GCGCGGCTAT CGCACGCGGA TGCTGGACAC CGTAACGCAT
GAAGAAGCGA ATTGCCGCCT GATCCCCTGG GTCAAGCAGC GGTCGCGCTG GCTCAAGGGC
TTTGCCATGA CCTGGGGTGT GCATATGCGC GACCCGGTGG CGCTGTGGCG CGATCTGGGC
GCACGGCGCT TCATCGGCTT GCAGGTGCAG CTTTTCGCCT CGGTCTCGCA ATACCTGCTG
GCGCCGGTAC TGTGGAGCTT TTGGCTGCTC AGCCTCGGCC TGCCGCATCC GATGCGCGGG
ATGCTGTCGG GCATGCTGGG CGGCAATGCC ATCGCCATCC TGTTCACGCT GTTCGTGGCC
TCGGAACTGC TGAACATCGC CATCGGGCTT TGGGCGGTGC GCGGGCGGGG GCATCGCCAC
CTGCTGCCCT GGGTGCCGAC GCTGCACCTG TATTTCCCGC TCGGCTGCCT GGCGGCCTGG
AAGGCGATCT ACGAGGTGGT GGCCAAGCCC TTCTACTGGG ACAAGACGCA GCACGGCATC
TTCGAGGCCG GCCAGGAAGA GGCGCCCGAG CCCGCACCCA TCGCGCCGGG CAGGCTGATC
CCGCTGCGCA AGGTGGCCGA TCTGCACCCC TTGGCGCTGA TTGCCGACCC GGCCATGCCT
GCTCCGCGCT CGAAGCGCAA CTGGGCTTTC CTGCGCGGCA AACGCCTGAC CGCATGA
 
Protein sequence
MARIVPIRPF EGIPVLAALP DPAETVVSAR DLRPLGQILI EDGAVDPRNL FKALVMRQRQ 
SARLGEILLA NGWVREEALI RALSRQWRAS VLDLKALPPD PRLVDAMGAQ LCLAEGAVPW
RRVGGVTFIA TARPEGFQAL QDRLPQDFGA VRMLLCSENA AREAILALRR TALIRQAETR
VPAHESCRTR NERRFGRIAV ILIAATVLGL LLAPIAVIAL LTGWTVLTLI ASAALKLLSF
AAILRRHRRD RTKAEAMARD AIPPPEMTAP LPVISVMVPL FAEADIAEKL IGRLSRLDYP
RELMDILIVV EETDSVTCAA LEDARLPRWL RVVKVPDGPV RTKPRALNYA LNFCRGSIIG
VWDAEDRPEP GQLLKVARGF HFAPPEVVCL QGVLDYYNPR TNWLARAFTI EYASWFRGTL
AGAAALDLVV PLGGTTLFFR REALEEVGAW DAWNVTEDAD LGVRLTRRGY RTRMLDTVTH
EEANCRLIPW VKQRSRWLKG FAMTWGVHMR DPVALWRDLG ARRFIGLQVQ LFASVSQYLL
APVLWSFWLL SLGLPHPMRG MLSGMLGGNA IAILFTLFVA SELLNIAIGL WAVRGRGHRH
LLPWVPTLHL YFPLGCLAAW KAIYEVVAKP FYWDKTQHGI FEAGQEEAPE PAPIAPGRLI
PLRKVADLHP LALIADPAMP APRSKRNWAF LRGKRLTA