Gene Pden_2139 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_2139 
Symbol 
ID4579956 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp2140366 
End bp2141157 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content68% 
IMG OID639769469 
Productindole-3-glycerol-phosphate synthase 
Protein accessionYP_915927 
Protein GI119384871 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0134] Indole-3-glycerol phosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.248459 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATTC TCGACCGCAT CAAGGCCTAC AAGCTTCAGG AAATCGCCGC CGCCAAGGCC 
GCCCGGCCGC TGGCCGGCAT CGAGGCCGCG GCCCGCGAAG CATCGCCCCC CCGCGGCTTT
GCCGCCGCGC TGACCGACAA GGCCGCGCAG GGCCATGCGC TGATCGCCGA GATCAAGAAG
GCCAGCCCCT CCAAAGGGTT GATCCGCCCG GATTTCGACC CGCCGGCACT GGCCCGCGCC
TATCAGGCGG GTGGCGCCGC CTGCCTTTCG GTGCTGACCG ACGGCCCCAG CTTTCAGGGC
GCGCCGGAAT TCCTGACCGC CGCGCGCGAT GCCTGCGACC TGCCGGCGCT GCGCAAGGAT
TTCCTCTACG ATCCGTATCA GGTGGCCGAG GCCCGCGCCT GGGGCGCCGA TTGCATTCTG
ATCATCATGG CCTCTGTCGA TGACACGCTT GCCGCCGAGC TGGAGGACGC GGCCCTGCAT
TGGGGCATGG ATGCGCTGGT CGAGGTTCAC GACCGCGAGG AACTGGACCG CGCCTTGCGG
CTGAAATCGC CGCTGATCGG GGTGAACAAC CGCAATCTCA AGACCTTCGA GGTCAGCCTG
GACACCACGC TGGACCTGGC GCCGCATGTG CCGGCCGAGC GCGATCTGGT CTGCGAGAGC
GGGCTGTTCA CGCCTTCCGA CCTGAACCGC ATGGCCGAGG CGGGGGTCAG GCGCTTCCTG
ATCGGCGAAA GCCTGATGCG CCAGCAGGAC GTGACCGCCG CCACCCGCAG CATCCTGGGC
CTCGCGGCAT GA
 
Protein sequence
MDILDRIKAY KLQEIAAAKA ARPLAGIEAA AREASPPRGF AAALTDKAAQ GHALIAEIKK 
ASPSKGLIRP DFDPPALARA YQAGGAACLS VLTDGPSFQG APEFLTAARD ACDLPALRKD
FLYDPYQVAE ARAWGADCIL IIMASVDDTL AAELEDAALH WGMDALVEVH DREELDRALR
LKSPLIGVNN RNLKTFEVSL DTTLDLAPHV PAERDLVCES GLFTPSDLNR MAEAGVRRFL
IGESLMRQQD VTAATRSILG LAA