Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_2033 |
Symbol | |
ID | 4580417 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | + |
Start bp | 2039634 |
End bp | 2041964 |
Gene Length | 2331 bp |
Protein Length | 776 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639769362 |
Product | 1A family penicillin-binding protein |
Protein accession | YP_915821 |
Protein GI | 119384765 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.431137 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.140468 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAAC CGACCGGCAC GGGCCGCATT GTCGCGGACA AGCGCAATTT CGACCAAGCC CCTCAGAAAA GGCAGAAACA ATCCGGCGGA GCGCCCGGCA AGCCGCCCCG GCGACCGCGG CGCGGCAATG TCGTGACCCG GGGAATCGCG GGATTCGTCT CGCTGGTCTG GCGGGTGATC TGGGGTTCGG TCTGGCGGCT GGGGCTGACG GTGGCGCTGA TTCTCTTTGC CGCCAGCTTC TATTACTACA CGACGCTGCC CGAACCTTCG GCGCTTTTCG ACGGCCGTGC CCGCGGTTCG GTCACCATGC TGGACGCCGA GGGCCGGGTT TTCGCCTGGC GCGGCGAAAC TTTCGGCATG GTCAGCGCCG ACAAGATCGC GCCGGTGCTG AAGGATGCAG TGGTCGCGAC CGAGGACAAG CGCTTCTATC GCCACCTGGG CGTGGACCCG CGCGGCATCG CCAGCGCCGT CAAGATCAAC ATGGCAGCCG GCCGCGGTCC GCTGGAGGGC AACGGCGGCT CGACCATCAC CCAGCAGGTG GCCAAGCTCC TGTGCCTGGG CGAGACCTTC GACCCGATCC GCTGGAAATC CGAGGCCGAT TTCGAGGCGG AATGCCGCAA GTCCTCGATC TGGCGCAAGG TCAAGGAAGT GCCCTATGCG CTGGCGATGG AGGCGAAATA CTCCAAGCAG GACATCCTGA ACATCTATAT GAACCGCTCC TATCTGGGTG CGGGCGCGCG CGGCTTCGAG GCGGCGGCGC AGCGCTATTT CGACAAGTCG GCGGCCGATG TGAACGCCGC CGAGGCCGCG ATGCTGGCCG GCCTGCTCAA GGCGCCCAGC TATTTCGCAC CGACCTCGAA CCTGCAGCGC GCGCAGGACC GGGCCACGGT GATCCTGGGG CTGATGCATG AGCAGGGCTA TCTGGACGAC AAGCAATTCG CCGAGGCCAA GACGCAGCCG GCAGCGCTGT CCAGGGCGGC AGCGGCGCGG GCGGGCGGCT ATTTCGCCGA TTGGGTGATG GAATCCGGCC CCGGCTTCCT GACCAGCGAG ACGACCGAGG ATGTCACCAT CACCACCACG TTCGACCAGC GCGTGCAGCG CGCCGCCGAA CGGGCGCTGA AGCGCATCTT CGACGAGAAG GTCGCGCCCG GCTCCAAGGC GCAGGCGGCG GTGGTGGTGA TGTCGCCGGA CGGCGCGGTG CGGGCGATGA TCGGCGGGCG CGACAATACC GCGACCGGCA CCTTCAACCG CGCCACCCAG GCCAAGCGGC AGACCGGCTC CAGCTTCAAG CCCTTCGTCT ATGCCGCCGC GCTGGACCAG GGCTACAGCC CGAACGACAC GGTGCTGGAC GCGCCGCTGA CCATCAACGT GCGCGGCTCG GGGCCGTGGT CGCCGCAGAA CTATACCCGC CGCTATTCGG GCGAGGTGAC GCTGACCCGC GCGCTGTCGC AATCGCTGAA CACCGCGACG ATCCGCCTGC AAGAGATCGC CGGCCGCGAC GCGGTGCGCC GCGTGGCGCA GGATTTCGGC TTTGCCAGCG ACCTGGCCAG CGGCCCCTCG CTGGGGCTGG GCGTGTCGGA ATCGACGCTG CTGGCCATGA CCGGCGCCTA TGCCGGCATC CGCAACGGCG GCACCGCCGT CAGCCCCTAC GGTCTGGTCG AATTGCGCAT CAAGGGCGAC GATCAGGCGC TGATCGGCCA GGCGGGCGGC ATGGGCCTGC GCGTGATCTC GCAAAAGGCG GCCGGAGAGT TGATCGGCAT GATGCAGCAG GTGATCGAGC GCGGTACCGG CACCCGCGCG AAACTGTCGG GTCGTCCGGC GGCGGGCAAG ACCGGCACCA CCTCCAGCTA TCGCGACGCC TGGTTCATCG GTTTCACCGG GCAATACGTC ACCGGCGTCT GGATGGGCTA CGACGACAAC ACGCCGCTCA AGGGCGTGAC CGGCGGCGGG CTGCCGGCCG AGATCTGGCA GGCCGTGATG GCCGAGATCC ACGACGGCCT GCCGGTCGAG ACGCTGGGCA ATTTCGCCTT CGACCCCGAC AGCGCCGTGC CGCAGGTGGT CAGCACCGGC GGCGATGGCG CGGCCGATCC GCTGGCCGCC GCGCTTTCCG AGGCGCTCGG CCAACCCTCG CCGCAGGGCC AGGGCCAGGC ACAGCCCGCG CCCTCCGAGG GGCAGTCCCT GCCCGATCCA GGCGTACAGA CGCCCGGCGG CCCGCCCGCC TTCCCGGCCG AGACCGTGAC CAGCGGGCCC GAGGCCGAGA TGCCGCCGCC CGACGCCGAC GATGCGCTGA CCCAGGCGTT GCGAGGCATC GAAGGGGTCT ATCAGCAATA G
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Protein sequence | MKKPTGTGRI VADKRNFDQA PQKRQKQSGG APGKPPRRPR RGNVVTRGIA GFVSLVWRVI WGSVWRLGLT VALILFAASF YYYTTLPEPS ALFDGRARGS VTMLDAEGRV FAWRGETFGM VSADKIAPVL KDAVVATEDK RFYRHLGVDP RGIASAVKIN MAAGRGPLEG NGGSTITQQV AKLLCLGETF DPIRWKSEAD FEAECRKSSI WRKVKEVPYA LAMEAKYSKQ DILNIYMNRS YLGAGARGFE AAAQRYFDKS AADVNAAEAA MLAGLLKAPS YFAPTSNLQR AQDRATVILG LMHEQGYLDD KQFAEAKTQP AALSRAAAAR AGGYFADWVM ESGPGFLTSE TTEDVTITTT FDQRVQRAAE RALKRIFDEK VAPGSKAQAA VVVMSPDGAV RAMIGGRDNT ATGTFNRATQ AKRQTGSSFK PFVYAAALDQ GYSPNDTVLD APLTINVRGS GPWSPQNYTR RYSGEVTLTR ALSQSLNTAT IRLQEIAGRD AVRRVAQDFG FASDLASGPS LGLGVSESTL LAMTGAYAGI RNGGTAVSPY GLVELRIKGD DQALIGQAGG MGLRVISQKA AGELIGMMQQ VIERGTGTRA KLSGRPAAGK TGTTSSYRDA WFIGFTGQYV TGVWMGYDDN TPLKGVTGGG LPAEIWQAVM AEIHDGLPVE TLGNFAFDPD SAVPQVVSTG GDGAADPLAA ALSEALGQPS PQGQGQAQPA PSEGQSLPDP GVQTPGGPPA FPAETVTSGP EAEMPPPDAD DALTQALRGI EGVYQQ
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