| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2033 |
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| Symbol | |
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| ID | 4580417 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 2039634 |
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| End bp | 2041964 |
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| Gene Length | 2331 bp |
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| Protein Length | 776 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639769362 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_915821 |
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| Protein GI | 119384765 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.431137 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.140468 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAAC CGACCGGCAC GGGCCGCATT GTCGCGGACA AGCGCAATTT CGACCAAGCC
CCTCAGAAAA GGCAGAAACA ATCCGGCGGA GCGCCCGGCA AGCCGCCCCG GCGACCGCGG
CGCGGCAATG TCGTGACCCG GGGAATCGCG GGATTCGTCT CGCTGGTCTG GCGGGTGATC
TGGGGTTCGG TCTGGCGGCT GGGGCTGACG GTGGCGCTGA TTCTCTTTGC CGCCAGCTTC
TATTACTACA CGACGCTGCC CGAACCTTCG GCGCTTTTCG ACGGCCGTGC CCGCGGTTCG
GTCACCATGC TGGACGCCGA GGGCCGGGTT TTCGCCTGGC GCGGCGAAAC TTTCGGCATG
GTCAGCGCCG ACAAGATCGC GCCGGTGCTG AAGGATGCAG TGGTCGCGAC CGAGGACAAG
CGCTTCTATC GCCACCTGGG CGTGGACCCG CGCGGCATCG CCAGCGCCGT CAAGATCAAC
ATGGCAGCCG GCCGCGGTCC GCTGGAGGGC AACGGCGGCT CGACCATCAC CCAGCAGGTG
GCCAAGCTCC TGTGCCTGGG CGAGACCTTC GACCCGATCC GCTGGAAATC CGAGGCCGAT
TTCGAGGCGG AATGCCGCAA GTCCTCGATC TGGCGCAAGG TCAAGGAAGT GCCCTATGCG
CTGGCGATGG AGGCGAAATA CTCCAAGCAG GACATCCTGA ACATCTATAT GAACCGCTCC
TATCTGGGTG CGGGCGCGCG CGGCTTCGAG GCGGCGGCGC AGCGCTATTT CGACAAGTCG
GCGGCCGATG TGAACGCCGC CGAGGCCGCG ATGCTGGCCG GCCTGCTCAA GGCGCCCAGC
TATTTCGCAC CGACCTCGAA CCTGCAGCGC GCGCAGGACC GGGCCACGGT GATCCTGGGG
CTGATGCATG AGCAGGGCTA TCTGGACGAC AAGCAATTCG CCGAGGCCAA GACGCAGCCG
GCAGCGCTGT CCAGGGCGGC AGCGGCGCGG GCGGGCGGCT ATTTCGCCGA TTGGGTGATG
GAATCCGGCC CCGGCTTCCT GACCAGCGAG ACGACCGAGG ATGTCACCAT CACCACCACG
TTCGACCAGC GCGTGCAGCG CGCCGCCGAA CGGGCGCTGA AGCGCATCTT CGACGAGAAG
GTCGCGCCCG GCTCCAAGGC GCAGGCGGCG GTGGTGGTGA TGTCGCCGGA CGGCGCGGTG
CGGGCGATGA TCGGCGGGCG CGACAATACC GCGACCGGCA CCTTCAACCG CGCCACCCAG
GCCAAGCGGC AGACCGGCTC CAGCTTCAAG CCCTTCGTCT ATGCCGCCGC GCTGGACCAG
GGCTACAGCC CGAACGACAC GGTGCTGGAC GCGCCGCTGA CCATCAACGT GCGCGGCTCG
GGGCCGTGGT CGCCGCAGAA CTATACCCGC CGCTATTCGG GCGAGGTGAC GCTGACCCGC
GCGCTGTCGC AATCGCTGAA CACCGCGACG ATCCGCCTGC AAGAGATCGC CGGCCGCGAC
GCGGTGCGCC GCGTGGCGCA GGATTTCGGC TTTGCCAGCG ACCTGGCCAG CGGCCCCTCG
CTGGGGCTGG GCGTGTCGGA ATCGACGCTG CTGGCCATGA CCGGCGCCTA TGCCGGCATC
CGCAACGGCG GCACCGCCGT CAGCCCCTAC GGTCTGGTCG AATTGCGCAT CAAGGGCGAC
GATCAGGCGC TGATCGGCCA GGCGGGCGGC ATGGGCCTGC GCGTGATCTC GCAAAAGGCG
GCCGGAGAGT TGATCGGCAT GATGCAGCAG GTGATCGAGC GCGGTACCGG CACCCGCGCG
AAACTGTCGG GTCGTCCGGC GGCGGGCAAG ACCGGCACCA CCTCCAGCTA TCGCGACGCC
TGGTTCATCG GTTTCACCGG GCAATACGTC ACCGGCGTCT GGATGGGCTA CGACGACAAC
ACGCCGCTCA AGGGCGTGAC CGGCGGCGGG CTGCCGGCCG AGATCTGGCA GGCCGTGATG
GCCGAGATCC ACGACGGCCT GCCGGTCGAG ACGCTGGGCA ATTTCGCCTT CGACCCCGAC
AGCGCCGTGC CGCAGGTGGT CAGCACCGGC GGCGATGGCG CGGCCGATCC GCTGGCCGCC
GCGCTTTCCG AGGCGCTCGG CCAACCCTCG CCGCAGGGCC AGGGCCAGGC ACAGCCCGCG
CCCTCCGAGG GGCAGTCCCT GCCCGATCCA GGCGTACAGA CGCCCGGCGG CCCGCCCGCC
TTCCCGGCCG AGACCGTGAC CAGCGGGCCC GAGGCCGAGA TGCCGCCGCC CGACGCCGAC
GATGCGCTGA CCCAGGCGTT GCGAGGCATC GAAGGGGTCT ATCAGCAATA G
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| Protein sequence | MKKPTGTGRI VADKRNFDQA PQKRQKQSGG APGKPPRRPR RGNVVTRGIA GFVSLVWRVI
WGSVWRLGLT VALILFAASF YYYTTLPEPS ALFDGRARGS VTMLDAEGRV FAWRGETFGM
VSADKIAPVL KDAVVATEDK RFYRHLGVDP RGIASAVKIN MAAGRGPLEG NGGSTITQQV
AKLLCLGETF DPIRWKSEAD FEAECRKSSI WRKVKEVPYA LAMEAKYSKQ DILNIYMNRS
YLGAGARGFE AAAQRYFDKS AADVNAAEAA MLAGLLKAPS YFAPTSNLQR AQDRATVILG
LMHEQGYLDD KQFAEAKTQP AALSRAAAAR AGGYFADWVM ESGPGFLTSE TTEDVTITTT
FDQRVQRAAE RALKRIFDEK VAPGSKAQAA VVVMSPDGAV RAMIGGRDNT ATGTFNRATQ
AKRQTGSSFK PFVYAAALDQ GYSPNDTVLD APLTINVRGS GPWSPQNYTR RYSGEVTLTR
ALSQSLNTAT IRLQEIAGRD AVRRVAQDFG FASDLASGPS LGLGVSESTL LAMTGAYAGI
RNGGTAVSPY GLVELRIKGD DQALIGQAGG MGLRVISQKA AGELIGMMQQ VIERGTGTRA
KLSGRPAAGK TGTTSSYRDA WFIGFTGQYV TGVWMGYDDN TPLKGVTGGG LPAEIWQAVM
AEIHDGLPVE TLGNFAFDPD SAVPQVVSTG GDGAADPLAA ALSEALGQPS PQGQGQAQPA
PSEGQSLPDP GVQTPGGPPA FPAETVTSGP EAEMPPPDAD DALTQALRGI EGVYQQ
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