| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1938 |
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| Symbol | |
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| ID | 4581060 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 1937038 |
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| End bp | 1938714 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639769259 |
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| Product | cytochrome-c oxidase |
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| Protein accession | YP_915727 |
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| Protein GI | 119384671 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.652657 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0264724 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGACG CAGCCGTTCA CGGCCACGGT GACCATCATG ACACCCGCGG GTTCTTCACC
CGCTGGTTCA TGTCAACAAA CCACAAGGAT ATCGGTATCC TTTACCTGTT CACGGCCGGC
ATCGTCGGCC TGATCTCGGT ATGCTTCACC GTCTATATGC GGATGGAACT GCAGCATCCG
GGCGTGCAAT ACATGTGCCT GGAAGGCGCG CGTCTCATCG CCGACGCCTC GGCGGAATGC
ACCCCGAACG GACACCTGTG GAACGTCATG ATCACCTACC ACGGCGTGCT CATGATGTTC
TTCGTCGTGA TCCCGGCACT GTTCGGCGGT TTCGGCAACT ATTTCATGCC GCTGCATATC
GGCGCCCCGG ACATGGCCTT CCCGCGGCTG AACAACCTCT CCTACTGGAT GTATGTCTGC
GGCGTGGCCC TGGGCGTCGC CTCGCTGCTG GCGCCGGGCG GCAACGACCA GATGGGTTCG
GGCGTCGGCT GGGTGCTCTA CCCGCCGCTC TCGACCACCG AGGCGGGCTA TTCCATGGAC
CTGGCGATCT TTGCCGTCCA CGTCTCGGGT GCCTCGTCGA TCCTGGGCGC GATCAACATC
ATCACCACCT TCCTCAACAT GCGCGCACCG GGCATGACGC TGTTCAAGGT GCCGCTGTTT
GCCTGGTCGG TCTTCATCAC CGCCTGGCTG ATCCTGCTGT CGCTGCCGGT TCTGGCGGGC
GCGATCACCA TGCTGCTGAT GGACCGCAAC TTCGGCACGC AGTTCTTCGA TCCGGCCGGC
GGCGGCGACC CGGTGCTTTA CCAGCACATC CTGTGGTTCT TCGGCCATCC CGAGGTCTAT
ATCATCATCC TGCCGGGCTT CGGCATCATC AGCCACGTCA TCTCGACCTT CGCCAAGAAG
CCGATCTTCG GCTACCTGCC GATGGTGCTG GCCATGGCGG CGATCGGCAT CCTGGGCTTC
GTCGTCTGGG CGCACCACAT GTACACGGCC GGCATGTCGC TGACCCAGCA GGCCTATTTC
ATGCTGGCGA CCATGACCAT CGCGGTGCCC ACCGGCATCA AGGTCTTCTC GTGGATCGCG
ACCATGTGGG GCGGCAGCAT CGAGTTCAAG ACGCCGATGC TCTGGGCCTT CGGCTTCCTG
TTCCTGTTCA CCGTCGGCGG CGTGACCGGC GTGGTGCTGA GCCAGGCGCC GCTGGACCGG
GTCTATCACG ACACCTATTA CGTCGTGGCC CACTTCCACT ACGTGATGTC GCTGGGCGCG
GTGTTCGGCA TCTTCGCCGG GGTCTATTAC TGGATCGGCA AGATGTCGGG CCGGCAATAC
CCGGAATGGG CGGGCCAGCT GCATTTCTGG ATGATGTTCA TCGGCTCGAA CCTGATCTTC
TTCCCGCAGC ACTTCCTGGG CCGCCAGGGC ATGCCGCGGC GCTATATCGA CTATCCGGTC
GAGTTCGCCT ATTGGAACAA CATCTCGTCG ATCGGCGCCT ATATCTCCTT CGCGTCCTTC
CTGTTCTTCA TCGGCATCGT GTTCTACACG CTCTTCGCCG GCAAGCGCGT GAACGTGCCG
AACTACTGGA ACGAGCATGC CGACACGCTG GAATGGACCC TGCCCTCGCC GCCGCCCGAG
CATACCTTCG AGACCCTGCC CAAGCGCGAG GACTGGGATC GCGCACACGC GCATTGA
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| Protein sequence | MADAAVHGHG DHHDTRGFFT RWFMSTNHKD IGILYLFTAG IVGLISVCFT VYMRMELQHP
GVQYMCLEGA RLIADASAEC TPNGHLWNVM ITYHGVLMMF FVVIPALFGG FGNYFMPLHI
GAPDMAFPRL NNLSYWMYVC GVALGVASLL APGGNDQMGS GVGWVLYPPL STTEAGYSMD
LAIFAVHVSG ASSILGAINI ITTFLNMRAP GMTLFKVPLF AWSVFITAWL ILLSLPVLAG
AITMLLMDRN FGTQFFDPAG GGDPVLYQHI LWFFGHPEVY IIILPGFGII SHVISTFAKK
PIFGYLPMVL AMAAIGILGF VVWAHHMYTA GMSLTQQAYF MLATMTIAVP TGIKVFSWIA
TMWGGSIEFK TPMLWAFGFL FLFTVGGVTG VVLSQAPLDR VYHDTYYVVA HFHYVMSLGA
VFGIFAGVYY WIGKMSGRQY PEWAGQLHFW MMFIGSNLIF FPQHFLGRQG MPRRYIDYPV
EFAYWNNISS IGAYISFASF LFFIGIVFYT LFAGKRVNVP NYWNEHADTL EWTLPSPPPE
HTFETLPKRE DWDRAHAH
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