Gene Pden_1893 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_1893 
Symbol 
ID4580552 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp1893409 
End bp1893801 
Gene Length393 bp 
Protein Length130 aa 
Translation table11 
GC content67% 
IMG OID639769213 
Productmethionine-R-sulfoxide reductase 
Protein accessionYP_915684 
Protein GI119384628 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0229] Conserved domain frequently associated with peptide methionine sulfoxide reductase 
TIGRFAM ID[TIGR00357] methionine-R-sulfoxide reductase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.513926 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.442885 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGAGC GGATCACCAA GACCGATGCG GAGTGGCGCG CAGAGCTGGA TCCCGAAACC 
TATCGCGTGA CCCGGCAGGC GGGAACCGAG CGGCCGTTCT CGCATCCGGG CTTTCCCAAG
GGGCCGGGGC ATTACGAATG CGTCTGCTGC GGGGCACGGC TGTTCGACGG CGATGCCAAG
TTTGAAAGCC ATTGCGGCTG GCCCAGCTTT TCCCAGCCCG GCGGCAAGAT CGACGAGCAT
CGCGACATCA CCCACGGCAT GATCCGCACC GAGGTGCGTT GCCACCGCTG CGACGCGCAT
CTGGGCCATG TCTTTCCCGA CGGCCCGCCG CCCACGGGCC TGCGCTATTG CATCAACGGC
GTGGCGCTGC GCTTCGTGCC GGAACCGGGC TGA
 
Protein sequence
MSERITKTDA EWRAELDPET YRVTRQAGTE RPFSHPGFPK GPGHYECVCC GARLFDGDAK 
FESHCGWPSF SQPGGKIDEH RDITHGMIRT EVRCHRCDAH LGHVFPDGPP PTGLRYCING
VALRFVPEPG