Gene Pden_1889 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_1889 
Symbol 
ID4580548 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp1889590 
End bp1890090 
Gene Length501 bp 
Protein Length166 aa 
Translation table11 
GC content70% 
IMG OID639769209 
ProductMgtC/SapB transporter 
Protein accessionYP_915680 
Protein GI119384624 
COG category[S] Function unknown 
COG ID[COG1285] Uncharacterized membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.296352 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.742707 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGACA TGCTGGCGGG CGAGTTCTCG CGCCCCATGA GCCTGCCCGC CGGCGTGGTC 
GTCCTGCGGC TGACCATGGC GGTTCTGCTG GGCGGGGTGA TCGGCTGGGA ACGCGAGGTC
AAATCCCGCG CCGCCGGGCT GCGCACGCAT ATGCTGATCG CCCTGGCGGC GGCCTGCTTC
ACGCTGGTGG CTATGGAACT GGTCGATTTC AGCCCGGTGA ACGAAGAGCA GCAGCGCACC
GACCCGCTGC GGCTGATCGA GGCGGTGACG GCCGGCGTGG CCTTCCTTGC CGCTGGGTCC
ATCGTCATCA ACAAGGGCAA TGTGCGCGGC ATCACCACCG GCGCCTCGAT GTGGCTGTGC
GGCGCCGTCG GGCTGTGCTG CGGCACCGGC GACCTGCGGC TGGCGCTGAT GGCCACCGGC
ATGGCGATGG TGGTGCTTTA CCTGATCCGG GTGCTTGTCA GCCCCGCCGC CCGCGAGGTG
GCCGGGGGCG ACGAAGACTA G
 
Protein sequence
MLDMLAGEFS RPMSLPAGVV VLRLTMAVLL GGVIGWEREV KSRAAGLRTH MLIALAAACF 
TLVAMELVDF SPVNEEQQRT DPLRLIEAVT AGVAFLAAGS IVINKGNVRG ITTGASMWLC
GAVGLCCGTG DLRLALMATG MAMVVLYLIR VLVSPAAREV AGGDED