Gene Pden_1880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_1880 
Symbol 
ID4580539 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp1883878 
End bp1884402 
Gene Length525 bp 
Protein Length174 aa 
Translation table11 
GC content60% 
IMG OID639769200 
Producthypothetical protein 
Protein accessionYP_915671 
Protein GI119384615 
COG category[S] Function unknown 
COG ID[COG2862] Predicted membrane protein 
TIGRFAM ID[TIGR00645] conserved hypothetical transmembrane protein 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACGCC TTCTCGAACG CAGCCTTTTC GCCAGTCGCT GGATGATGGC GCCGATCTAT 
GTCGGTCTGG CGCTGTCGCT GTTGATCCTG CTTTGGGTCT TTGCGCTGGA ACTGTGGCAC
CTGGTCGGCA TCCTGCCGGT CATGACCGTC AACGACGCGG TGCTGGGCGT GCTGGCGCTG
ATCGACCTGA GCCTGGCGGC GAACCTTTTG CTGATCGTGA TCTTTTCGGG CTACGAGAAT
TTCGTCAGCC GCATGGACCT GAGCGAGCAT GAGGACAGGC CGGACTGGCA GGGCGAGGTC
GATTTCTCGG GGCTGAAGCT GAAGCTGGTG GCCTCGATCG TGGCGATCTC GGGCATCCAT
CTGCTGAAGG TGTTCATGGA TGTCAGCAAA TACGCCCCCG ATCAGATCCG CTGGATGGTG
GTTATCCATC TGGTCTTCGT GATCTCGGGC GTGCTGCTGG CCGCGATGGA CTGGATCGCG
AACCATGGCA AGACGCTGAA GAAGGCCAAG GCTTCCCAGG CATGA
 
Protein sequence
MERLLERSLF ASRWMMAPIY VGLALSLLIL LWVFALELWH LVGILPVMTV NDAVLGVLAL 
IDLSLAANLL LIVIFSGYEN FVSRMDLSEH EDRPDWQGEV DFSGLKLKLV ASIVAISGIH
LLKVFMDVSK YAPDQIRWMV VIHLVFVISG VLLAAMDWIA NHGKTLKKAK ASQA