| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1848 |
|---|
| Symbol | |
|---|
| ID | 4581032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 1846445 |
|---|
| End bp | 1848064 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639769168 |
|---|
| Product | cbb3-type cytochrome c oxidase subunit I |
|---|
| Protein accession | YP_915641 |
|---|
| Protein GI | 119384585 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3278] Cbb3-type cytochrome oxidase, subunit 1 |
|---|
| TIGRFAM ID | [TIGR00780] cytochrome c oxidase, cbb3-type, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGGACA CCATCAAGCT GATCGCGCTG GGCACGATCG CGGTCCTGGC CGCGATCGCG
GCCAATTATG CGCGACCCGA TGATCTCGCG TATCTGGTCA ACGCCCTGAT CATCATGCTG
GCGGCGGGGA TCATGTTCCT GCGCGTGCTG CGTCAGATGG GCAATGAGCA GCCTGCGCTC
GAGCCGCACC CCGAAACGCA ATATATGGAC GACGTCGTCC GGGCGGGCGT GATCGCCACC
GCGTTCTGGG GCGTGGTGGG CTTTCTGGTC GGGGTGGTCA TCGCCTTCCA GCTGGCCTTC
CCGGCGCTGA ACCTCAGCGA CATCACCATG GGCTATACCA ATTTCGGCAA GCTTCGCCCG
CTGCATACCT CGGCGGTGAT CTTCGCCTTT GGCGGCAACG CCCTGATCGC GACCTCGTTC
TACGTGGTGC AGCGCACCTC GGCGGCGCGG CTCTGGGGCG GCAACGCGGC CTGGTTCGTG
TTCTGGGGCT ATCAGCTCTT CATCGTTCTG GCCGCGACCG GCTACATCCT GGGCGCCACC
CAGTCCAAGG AATATGCCGA GCCGGAATGG TATGTGGACT GGTGGCTGAC CGTCGTCTGG
GTCGTCTACC TGGCAGTGTT CCTGGGCACG ATCCTGAAGC GGAAAGAGCC GCATATCTAT
GTGGCGAACT GGTTCTACCT GTCCTTCATC GTCACCATCG CCATGCTGCA TATCGTCAAC
AACCTGGCGA TCCCGGTCAG CCTCTTCGGC TCGAAATCGG TGCAGCTCTT CTCGGGCGTG
CAGGACGCGA TGACGCAATG GTGGTATGGC CACAACGCGG TGGGCTTCTT CCTGACGGCG
GGCTTCCTGG GCATGATGTA TTACTTCATC CCCAAGCAGG CCGAGCGTCC GGTCTACAGC
TACAAGCTGT CCATCATCCA CTTCTGGGCG CTGATCTTCC TTTATATCTG GGCCGGTCCG
CACCACCTGC ACTATACCGC GCTGCCCGAC TGGGCCTCGA CGCTGGGCAT GGTGTTCTCG
ATCATCCTGT GGATGCCCAG CTGGGGCGGC ATGATCAACG GGCTGATGAC GCTCTCGGGC
GCCTGGGACA AGCTGCGCAC CGATCCGATC ATCCGCATGA TGGTGGTGGC CGTCGGCTTC
TACGGCATGG CGACCTTCGA GGGGCCGATG ATGTCGATCA AGGCGGTGAA CTCGCTGTCG
CATTACACCG ACTGGACCAT CGGTCACGTC CATTCCGGCG CGCTGGGCTG GAACGGCATG
ATCACCTTTG GCGCGCTCTA CTACCTGGTG CCGCGGCTTT GGGGACGTGA GCGGCTTTAT
TCGACGGGGC TGGTCAGCTG GCACTTCTGG CTCGCCACCA TCGGCCTGGT GCTCTACGCG
GCCTCGATGT GGGTCTCGGG CATCATGGAA GGGTTGATGT GGCGCGAGGT CGACGCCCAG
GGCTTCCTGG TCAACGCCTT TGCCGACACG GTCGCCGCGA AATTCCCGAT GAACGTGGTG
CGGGCCCTGG GCGGCGTGCT CTATCTCGGC GGTGCGCTGA TCATGTGCTA CAACCTGTGG
GCCACCGTCG CCAAGCAGCC CAAGACCCAA TCGACCGCCG CTGCGGTTCC TGCCGAGTGA
|
|---|
| Protein sequence | MLDTIKLIAL GTIAVLAAIA ANYARPDDLA YLVNALIIML AAGIMFLRVL RQMGNEQPAL
EPHPETQYMD DVVRAGVIAT AFWGVVGFLV GVVIAFQLAF PALNLSDITM GYTNFGKLRP
LHTSAVIFAF GGNALIATSF YVVQRTSAAR LWGGNAAWFV FWGYQLFIVL AATGYILGAT
QSKEYAEPEW YVDWWLTVVW VVYLAVFLGT ILKRKEPHIY VANWFYLSFI VTIAMLHIVN
NLAIPVSLFG SKSVQLFSGV QDAMTQWWYG HNAVGFFLTA GFLGMMYYFI PKQAERPVYS
YKLSIIHFWA LIFLYIWAGP HHLHYTALPD WASTLGMVFS IILWMPSWGG MINGLMTLSG
AWDKLRTDPI IRMMVVAVGF YGMATFEGPM MSIKAVNSLS HYTDWTIGHV HSGALGWNGM
ITFGALYYLV PRLWGRERLY STGLVSWHFW LATIGLVLYA ASMWVSGIME GLMWREVDAQ
GFLVNAFADT VAAKFPMNVV RALGGVLYLG GALIMCYNLW ATVAKQPKTQ STAAAVPAE
|
|---|
| |