| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1775 |
|---|
| Symbol | |
|---|
| ID | 4580959 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 1764315 |
|---|
| End bp | 1766480 |
|---|
| Gene Length | 2166 bp |
|---|
| Protein Length | 721 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639769091 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_915568 |
|---|
| Protein GI | 119384512 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.441598 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCGGC ATGGCAAGAC GGCAATGGGC AGGCTGCTTT GGCAGGGAAC GGCTTTGGGG
GCGCTGGCGA TCGCCGGCGC GGCCGGGGCG CAAGATGCCC CGGTGACGCT GGACGAGGTG
GTGATCGAGG GCTCGTCGCC CTCGGCCTTC GTCGCCAAGC GGGCGCGCGG CGCTGCCAAG
ACCGACACGA GGCTGGTCGA GACGCCGCAG GCGGTCAACG TGGTCTCGAC CCGCGAGATC
GAGACGCGCG GCGCCCGCAC CGTGGCGCAG GCATTGCGCT ATACCCCCGG CCTGCATCCC
GAGCCGAACG GCTATGACAT CCGCTATGAC TGGCTTTATG TCCGCGGCTT CAACGCCTAT
GGCACCAGCT GGCTGAACGG GCTGGTGCTG CCCGGTGATC CGAGCAACTA CGCCACCCCG
AGCGTGAATC CCTATGCGCT GGAACGGGTC GAGGTGATCA AGGGCCCCGC CTCGGTGCTT
TACGGCCGCA GCGAGCCGGG CGGGCTGGTC AACCAGGTGA TGAAGCGTCC CGAGGATGCC
GCCCGGCGCG AGGTCGAGCT GGGCCTGACC TCCTTTGGCG GGGCGCAGTT CGGCTATGAC
TTCACCGGAC CGCTGTCCGA CCAGTTCAGC TATCGCATCG TCGGGCAGGT GCGCGACAAC
GGCACCCAGG TCGATACCGA ACGCGACCGC CAGTTCATGC TGGCGCCCAG CCTGACCTGG
CGGCCCGGCG ATGCGACCGA ACTGACGCTT TACGCCTATT ACCAGAAGGA CGATCCCAAG
AACTTCAATC CGCGCTTCTA TCCGGCGGTC GGCACGCTGA TCCGAAATCC CCTTGGCCAG
ATCCCGCGCG ACATCCATCT GGGCGATCCG GCGCTGAACC AGTTCAACCG CAGCTTCCGC
GCGGTCGGCT ATGAGTTCAG CCATGAGCTG AACGACACCT GGACGCTGCG CCAGAACCTG
CGCTACGGCA AGGCCCGGCA GGACATGCTG CTGGTGCTGG TCAACCCGGC CTTTGCCTAT
GGCGCCCCGG GCACGGTGCT GAACCGCGCC TCGGCGATCT CGGACGATTA CGTCACCAGC
TTCGCGGTGG ACAGCCAGAT CGAGGGCCGC TTCGCCACCG GCGCGGTCGA GCATCGGATC
CTGGCGGGAA TCGACCATGT CCGCGCCGAT TCCAGCACCA ATTTCGGCAA TGGCGTCGCC
GGCGTTCCGC CGCTGGACTA TCGCGACCCG GTCTATGGCA CCGTCGGCAT CCCTGTTCCC
GCCGTCACCC GCTCGGCCCT GCAAGAGCAG CGCCAGACCG GGCTCTATGT TCAGGACCAA
CTGCGCTACG GCAATTGGAT CGGTACGCTG GGCCTGCGCC ATGACTGGTC GCGGATCGAG
ACGCGCGACC GCATGTCGGA TGCGCGCTAT GCCAACAAGG ACAGCCAGAC CTCGGTCCGG
GCCGGCGTCA CCTACCTGAT GGACAGCGGC CTTGCCCCCT ATGCCAGCTA TTCGACCGGC
TTCCTGCCGC TGCTGGGGCT CGACGCCTCG GGCGAACCCT TCGAGGCGCA GAAGACCCGC
CAGTTCGAGA TCGGCATGAA ATACGAGCCC AGGGACGGGC GCGGCCTGAT CGCGCTGTCG
CTCTATGACC TGACGGTGCG CAACGCGCTG ACGCCCTCGG CGGAAAATCC GCTGCTCAAT
GTGCAAAGCG GCAAGCAGCG CGTGCGCGGC GCCGAGGTCG AGGCGAAATA CGTGCTGGAC
CCGGAATGGA CGCTGGCCGC CGCCTATGCC TATTCGGACT CGAAGGTGCT GCGCTCGGGA
CGCGAGGGCG AGGAGGGTCG CGAGATGCTG ACCCTTCCCA GGCATCAGCT GACGCTTTGG
GCGGATTACA GCCCGGCGGC GGTGCCGGGA CTGCGGCTGT CGGCCGGGTT GCGGGCCATG
TCGGACTACC AGACGGATGT GAGCTACAAT CCCGACCTGC GCATCCCGGG CCGCGGCCTG
GTCGACATCG CCGCCGCCTA TGAACTGGGC GAGGTCCGGC CCGAATGGCA GGGGGCCGCG
GTGCAACTGA ACGTGACCAA CCTGTTCGAC AGGACCTATG TCAGCCATTG CCGCAACGCC
ACCGGCGGAA GCTGCAACTA TGGCGCCGCG CGCGAAGCCA CGCTGAGCGT GAAATACCGC
TGGTAA
|
|---|
| Protein sequence | MRRHGKTAMG RLLWQGTALG ALAIAGAAGA QDAPVTLDEV VIEGSSPSAF VAKRARGAAK
TDTRLVETPQ AVNVVSTREI ETRGARTVAQ ALRYTPGLHP EPNGYDIRYD WLYVRGFNAY
GTSWLNGLVL PGDPSNYATP SVNPYALERV EVIKGPASVL YGRSEPGGLV NQVMKRPEDA
ARREVELGLT SFGGAQFGYD FTGPLSDQFS YRIVGQVRDN GTQVDTERDR QFMLAPSLTW
RPGDATELTL YAYYQKDDPK NFNPRFYPAV GTLIRNPLGQ IPRDIHLGDP ALNQFNRSFR
AVGYEFSHEL NDTWTLRQNL RYGKARQDML LVLVNPAFAY GAPGTVLNRA SAISDDYVTS
FAVDSQIEGR FATGAVEHRI LAGIDHVRAD SSTNFGNGVA GVPPLDYRDP VYGTVGIPVP
AVTRSALQEQ RQTGLYVQDQ LRYGNWIGTL GLRHDWSRIE TRDRMSDARY ANKDSQTSVR
AGVTYLMDSG LAPYASYSTG FLPLLGLDAS GEPFEAQKTR QFEIGMKYEP RDGRGLIALS
LYDLTVRNAL TPSAENPLLN VQSGKQRVRG AEVEAKYVLD PEWTLAAAYA YSDSKVLRSG
REGEEGREML TLPRHQLTLW ADYSPAAVPG LRLSAGLRAM SDYQTDVSYN PDLRIPGRGL
VDIAAAYELG EVRPEWQGAA VQLNVTNLFD RTYVSHCRNA TGGSCNYGAA REATLSVKYR
W
|
|---|
| |