| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1754 |
|---|
| Symbol | |
|---|
| ID | 4581264 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 1740906 |
|---|
| End bp | 1741715 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639769069 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_915547 |
|---|
| Protein GI | 119384491 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00112045 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.182102 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGT CCATCCAGGG CAAGACCGCC ATCGTCACCG GGGCGGCGCG GGGCATCGGC
CTGGCCATCG CCCGGCATTT CGAGGAGGCG GGCGCCAATG TCATGTTCGC CGACAGCGAC
GAGCCGGCGC TGATGACCGA ACTGGGCGAC CAGGCCGAGG GCGAGGGGCC GGTGCGCGCC
TTTGCCGGCG ACCTGAGCCA GAAACTGACG CTGGCCAATC TTGTCTCGGC CACCATCGAC
GCCTTCGACC GGGTGGATAT CCTGGTCAAC GCGCATCGCA TGGTGCAGGG CTGCGACCCG
CTGACGGTGA ACGACGAGTT GCTGGGCGAC ATGCTGCGCC AGAACATGAG TTCGGGCCTG
CGCCTGTCGC AGATGGTCGC CAAGCGCATG ATGGCCCAGG CCGAAGAGGC CGACGAGGAT
GCGATCCAGC ACGGCGCCAT CGTCAACGTC ACCTCGCTGG CCGCCGACTG GCCGCAGCCG
CAGATGCTGG CCTATTCCAT CGCCAGTGCG GCGCAGGCGC AGGCCACGCG CTCATTGGCC
TCGGCCCTGG CGCCCAAGCG GATTCGCGTG AACGGCGTGG CCTTTGCCAG CATCATGTCG
AACAACCTGC AACTGAAGCT GCGCGAGGAT CCGGGCCTGC GCGAGCGCAT GGTGACGGCG
ACACCCCTGG GCCGGATCGC CGGCGCGGAC GAGTTGGCGG CGACGGTGCA GTTCCTGGCC
AGCGAGGCGT CGAGCTTTGT CACCGGGCAG ATCCTGCGCG TCGATGGCGG CCGCAGCCTG
GGCGACCCGC TGGCGCCCGG GGTCTACTGA
|
|---|
| Protein sequence | MSLSIQGKTA IVTGAARGIG LAIARHFEEA GANVMFADSD EPALMTELGD QAEGEGPVRA
FAGDLSQKLT LANLVSATID AFDRVDILVN AHRMVQGCDP LTVNDELLGD MLRQNMSSGL
RLSQMVAKRM MAQAEEADED AIQHGAIVNV TSLAADWPQP QMLAYSIASA AQAQATRSLA
SALAPKRIRV NGVAFASIMS NNLQLKLRED PGLRERMVTA TPLGRIAGAD ELAATVQFLA
SEASSFVTGQ ILRVDGGRSL GDPLAPGVY
|
|---|
| |