| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1743 |
|---|
| Symbol | |
|---|
| ID | 4581253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 1731341 |
|---|
| End bp | 1732780 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639769058 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_915536 |
|---|
| Protein GI | 119384480 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.236928 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCCG ATACGCGGGC GACCTGGCCG AAAGACGTTA TGACCAACGA AACCACCCGC
CCGAACCGTT CGGGCAATCC CCGCGCCCAG CAAGGCGGCA AGCCGCGTTT CCGCAGCGAC
AAGCCCAACA CCAACCACCG CCGTCACCGC GCCGAGCCGG AGGAGAAATT CATCCGCCGC
GCCATCCCCG AGATCGACAC CGCCTTCACC CGCATGGGGA TCGATGCGCG CGTGGCGATC
AACCTGCCCG GCCTGGGGAT CGAGACCCCC TCGCCCATCC AGGAGAAATC CATCCCCGGC
ATCGTCGCCG GCCGCGACCT TCTGGGCCTT GCCCAGACCG GCACCGGCAA GACGGCGGCC
TTCGGCCTGC CGATGCTGAC CCGGCTTCTG AACATCGGCC GCAAACCCGA GCCCAGGACC
TGCCGGGCGC TGATCCTGGC GCCGACCCGC GAGCTTGCGA CCCAGATCGC CGAGAATATC
GACAATTACG CCATCGGCAC GCCGATCCGG CAGTTCCGCG TCGTCGGCGG CGCCTCGATC
AACGTGCAGG TCCAGCGGCT GGAGCGCGGC GTCGACGTGC TGATCGCGAC GCCGGGCCGG
CTGATCGACC TGATCGAGCG CGGCGCCATC GACCTGTCGC AGACCAGGTA TCTGGTGCTG
GACGAGGCCG ACCAGATGCT GGACATCGGC TTCATCCACG CGCTGCGCCG CATCGCCAAG
ATGCTGCCGC GCGAACGCCA GACGCTGCTG TTCTCGGCCA CCATGCCGAA GCTGATGGAG
GAACTGGCCG ACAGCTATCT GAACGATCCC TTGCGCGTGG CGGTGAACCC GCCCGGCCAG
GCGGCGGAAA AGATCGACCA GGGCGTGCAT TTCGTCAACC AGGGCGACAA GGCGACGCTG
CTGGCCGAAT ACCTGTCCAA GCATGTGGAC GAGTTGGCCA TCGTCTTCGG CCGCACCAAG
CACGGCTCGG AAAAGCTGTG CAAGCTTCTG GACAAATGGG GCTTCAAGGT TGCCGCCATC
CACGGCAACA AGTCGCAGGG CCAGCGCGAG CGGGCCTTGG CCAGCTTCCG CGCCGGCGAG
ACCAAGGTGC TGGTCGCGAC CGACGTGGCG GCGCGCGGCC TCGACATTCC GCAGGTGGCG
CATGTCTACA ACTACGACCT GCCGAACGTG CCGGAAAACT ATGTCCACCG CATCGGCCGC
ACCGCGCGCG CCGGGCGCGA CGGGCGTGCC ATCGCATTCT GCTCGCCCAC CGAGATCGGA
GAGCTGCGCG CCATCGAAAA GGCGATGAAG GCCAAGATCG CCGTGGTCGG CGGCGAGGAG
CCCTTCGAGG CGGCCAAGAT CCGCGAGCGC GGCGGTCCCG CCGGCCGCCC GGCCCAAGGC
GCACGCAAGC GCCCGGCCCG GCGCCCCTCG CGCGCACCGA AAACGGCGCA GCGGGCCTGA
|
|---|
| Protein sequence | MRADTRATWP KDVMTNETTR PNRSGNPRAQ QGGKPRFRSD KPNTNHRRHR AEPEEKFIRR
AIPEIDTAFT RMGIDARVAI NLPGLGIETP SPIQEKSIPG IVAGRDLLGL AQTGTGKTAA
FGLPMLTRLL NIGRKPEPRT CRALILAPTR ELATQIAENI DNYAIGTPIR QFRVVGGASI
NVQVQRLERG VDVLIATPGR LIDLIERGAI DLSQTRYLVL DEADQMLDIG FIHALRRIAK
MLPRERQTLL FSATMPKLME ELADSYLNDP LRVAVNPPGQ AAEKIDQGVH FVNQGDKATL
LAEYLSKHVD ELAIVFGRTK HGSEKLCKLL DKWGFKVAAI HGNKSQGQRE RALASFRAGE
TKVLVATDVA ARGLDIPQVA HVYNYDLPNV PENYVHRIGR TARAGRDGRA IAFCSPTEIG
ELRAIEKAMK AKIAVVGGEE PFEAAKIRER GGPAGRPAQG ARKRPARRPS RAPKTAQRA
|
|---|
| |