| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1712 |
|---|
| Symbol | |
|---|
| ID | 4581338 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 1697832 |
|---|
| End bp | 1699442 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639769026 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_915505 |
|---|
| Protein GI | 119384449 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.334858 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTGTC CGATGGAAAG CTACGACTAT ATCGTGATCG GCGCGGGCAG CGCCGGCTGC
GTGCTGGCAA ACCGCCTCAG CGCCGATCCC GGCAACCGCG TGCTGCTGCT CGAGGCCGGG
GGGCGCGACA ATTACCACTG GATCCATATC CCGGTGGGCT ATCTCTACTG CATCGGCAAT
CCGCGCACCG ACTGGGGCTT TCGCACCGAA GCCGAACCGG GGCTGAACGG CCGTGCGCTG
CTTTATCCGC GCGGGCGGGT GCTGGGCGGC TGTTCCTCGA TCAACGGCAT GATCTATATG
CGCGGGCAGG CGGCGGATTA CGACCATTGG CGCCAGATGG GCTGCACCGG CTGGGGCTGG
GACGACGTGC TGCCGCTCTT CAAGGCGCAG GAGGACCATT ATCGCGGCGC CGACGACGTG
CATGGCGCCG GCGGCGAATT GCGGGTCGAG ACGGCGCGGG TCCGCTGGGC GGTGCTCGAC
GCCTTCATGG AGGCGGCGGA ACAGGCCGGC ATCCCGCGCA CCGAGGATTT CAATCGCGGC
GACAACGAAG GCGGCGGCTA TTTCGACGTG ACCCAGAAAA GCGGCTGGCG CTGGAGCGCG
GCCAAGGCTT TCCTGCGCCC GGTGCGCCAC CGCCAGAACC TGCGCATCCT GACCGGGGCC
GAGGTCGAGC GGCTGGTGAT CGAGGCGGGC GAGGTCACGG GCGTGGTCTT TCACCACCTG
GGCCAGCGGC GCGAAGTGCG CGCCGCGCGC GAGACGGTGC TGGCGGCAGG CTCCATCGGC
TCGGTGCAGA TCCTCGAACA TTCCGGCGTC GGGCAGGGCG GGATATTGCA GGCCGCCGGC
ATTGCCCCGC AGGTCGAGGT CCCGGGGCTG GGCGAGAACC TGCAGGACCA TCTGCAATTG
CGGCTGGTCT ACAAGGTCCG GGGCGTGCCG ACGCTGAACG AAAAGGCCTC GCACCTGATG
GGCAAGGCGG CGATCGGGCT GGAATACCTG CTGAAACGCT CGGGCCCGAT GTCGATGGCG
CCGAGCCAGC TGGGCATCTT CACCCGCTCG GGGCCGGACA AGGCGACGCC GGACCTGGAG
TTTCACGTCC AGCCGGTCAG CCTGGACAAG TTCGGCGACC CGGTGCATCC CTTCCCGGCC
ATGACCGCCT CGGTCTGCAA CCTGCGGCCG GAAAGCCGCG GTTCGGTCCA TGTCGCCGGG
CCGGATTTCC GCGCCCATCC CGCGATCCGG CCGAACTACC TTTCGACCGA GGCCGACCGC
GAGGTGGCCA TGCGCGCCGT CCGCCTGACC CGCAAGATCG CCGCGCAGCC GGCCTTCAAC
CGCTTCGACC CCGAGGAGCA TATCCCCGGC ATCGCCTTCC AGAGCGACGA GGATCTGGTC
CGCGCTGCCG GCGATATCGG CACCACGATC TTCCACCCGG TCGGCACCTG CCGCATGGGC
GCCGACGAGG GCGCGGTGGT CGATCCGCGG CTGCGGATGC GCGCGCTTGG CCGGCTGCGG
ATCGCCGATG CCTCGGTCAT GCCGACGATC ACCAGCGGCA ACACCAACGC GCCGGCGATG
ATGATCGCCG AAAAGGCCGC GCGGATGATG CTGGAGGATG CGAGGGGTTG A
|
|---|
| Protein sequence | MECPMESYDY IVIGAGSAGC VLANRLSADP GNRVLLLEAG GRDNYHWIHI PVGYLYCIGN
PRTDWGFRTE AEPGLNGRAL LYPRGRVLGG CSSINGMIYM RGQAADYDHW RQMGCTGWGW
DDVLPLFKAQ EDHYRGADDV HGAGGELRVE TARVRWAVLD AFMEAAEQAG IPRTEDFNRG
DNEGGGYFDV TQKSGWRWSA AKAFLRPVRH RQNLRILTGA EVERLVIEAG EVTGVVFHHL
GQRREVRAAR ETVLAAGSIG SVQILEHSGV GQGGILQAAG IAPQVEVPGL GENLQDHLQL
RLVYKVRGVP TLNEKASHLM GKAAIGLEYL LKRSGPMSMA PSQLGIFTRS GPDKATPDLE
FHVQPVSLDK FGDPVHPFPA MTASVCNLRP ESRGSVHVAG PDFRAHPAIR PNYLSTEADR
EVAMRAVRLT RKIAAQPAFN RFDPEEHIPG IAFQSDEDLV RAAGDIGTTI FHPVGTCRMG
ADEGAVVDPR LRMRALGRLR IADASVMPTI TSGNTNAPAM MIAEKAARMM LEDARG
|
|---|
| |