Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_1588 |
Symbol | |
ID | 4580851 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | + |
Start bp | 1566388 |
End bp | 1568613 |
Gene Length | 2226 bp |
Protein Length | 741 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639768905 |
Product | excinuclease ABC subunit B |
Protein accession | YP_915384 |
Protein GI | 119384328 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.359907 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0204454 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCAGA TTGACCCAGG CAGGAACAAA GGTGAAACCA TGGGCCACAA CAACACCAAC GCCCCCGTCG CGCGCTTTCC CGAGGTGAGC CGGCCCAAGC TCGAGGGCGG CAAGCGCTTC GTCATGCGTT CCGAGTTCCA GCCGGCGGGC GACCAGCCCA CCGCCATCGC CGAACTGTCG CAGGGCGTGC GGGCGGGCGA ACGCGACCAG GTGCTGCTGG GCGCCACCGG CACCGGCAAG ACCTTCACCA TGGCCAAGGT AATCGAGCAA ACCCAGCGCC CGGCGATCAT CCTGGCGCCC AACAAGACGC TGGCCGCGCA ATTATACGGC GAGTTCAAGG GCTTCTTCCC CGAAAATGCC GTGGAATATT TCGTCAGCTA TTACGACTAC TACCAGCCCG AAGCCTATGT CGCGCGTTCC GACACCTATA TCGAGAAGGA ATCGCAGATC AACGAGGCCA TCGACCGGAT GCGCCACTCG GCCACGCGGG CGCTGCTGGA ACGCGACGAC GTGATCATCG TCGCCTCGGT CTCCTGCATC TACGGCATCG GCTCGGTCGA GACCTATTCG GCGATGACGC AGGACATGGT GGTCGGCCAG CTCTACGACC AGCGCGAATT CCTGGCAGAA CTGGTGGCGC AGCAATATCG CCGCCTCGAC GCCGCCTTCC AGTGCGGTGG CTTCCGCGTG CGAGGCGATC TGGTCGAGGT CTGGCCGGCC CACTTGGAAG ACCGGGCCTG GCGCTTTGAC TTCTTCGGAA ACGAACTTGA ATCGATTACC GAATTCGATC CGCTGACCGG CGCCAAGACC GACAGCTTCA AGCAGATCCG CATCTATGCC AACAGCCACT ACGTCACTCC GCGGCCGACT TTGCAGCAGG CAATCAAGGG GATACGGACA GAACTTCAGA CACGGCTGAA GCAACTTGCC GACGAGGGCA AGCTGCTGGA GGCGCAGCGG CTTGAACAGC GCACGAACTT CGACCTGGAA ATGCTTGAAG CTACTGGAGT TTGCAACGGG ATCGAGAACT ATTCCCGCTA TCTGACCGGC CGGGCGCCCG GCGAGCCGCC GCCGACGCTG TTCGAGTTCA TCCCCGACAA TGCCATCGTC TTTGCCGACG AATCCCATGT CAGCGTGCCG CAGATCGGCG GCATGTATCG CGGCGACTTC CGGCGCAAGT TCACGCTGGC CGAGCATGGC TTCCGCCTGC CCAGCTGCAT GGACAACCGG CCGCTGAAAT TCGAGGAATG GGACGCGATG CGCCCGCAAT CGGTCTTTGT CAGCGCCACG CCTGCGCAAT GGGAGCTGGA CCAGACCGGC GGCGTCTTTA CCGAACAGGT CATCCGCCCC ACGGGCCTGC TGGACCCGCA GGTCGAGATC CGCCCGGTCG AGATGCAGGT GGACGACCTC TTGGACGAGG TGCGCAAGGT CGCCGCCGCC GGCATGCGCA CGCTGGTCAC CACCCTGACC AAGCGCATGG CCGAGGACCT GACCGAATAC CTGCACGAAC AGGGCATCCG CGTGCGCTAC ATGCACAGCG ACATCGACAC CATCGAGCGC ATCGAGATCC TGCGCGACCT GCGGCTGGGG GCCTTCGACG TTCTGGTGGG CATCAACCTG CTGCGCGAGG GGCTGGACAT CCCCGAATGC GGGCTGGTGG CGATCCTCGA TGCCGACAAG GAGGGCTTCC TGCGCTCGGA AACATCACTG ATCCAGACCA TCGGCCGGGC GGCGCGGAAC GCCGACGGCC GCGTCATCAT GTATGCCGAC CGCATCACCG GCAGCATGGA GCGCGCCATG GCCGAGACCG AGCGCCGGCG CCAGAAGCAG GTCGCCTATA ACGAAGCGCA CGGCATCACG CCGCAGACCG TGCGCAAGAA TGTCGAGGAC GTGCTGGCCG GGCTGTGGCA AGGCGATACC GATCAGGCGC GCATCACCAC CCGGGTCGAG AAACCGATGG TCGGCGCCAA CCTGGCGGCG CATTTGGACG CGCTGCGGGC GCAGATGCGC AAGGCGGCCG AGAACCTGGA ATTCGAGGAG GCCGCGCGGC TGCGCGACGA GGTGAAGCGG CTGGAGGCGG TCGAACTGGC GATCGCCGAC GACCCGCTGG CCCGGCAATC CGCCATCGAG GAGGCGGCCG AGGCGGCGGT CAAGTCATCG GGACGCTCGA CCGCGGGGCG GGCCGGACAG CGCGGCGGCA ACAAACGGTC GCGCCGCCGC GGCTGA
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Protein sequence | MRQIDPGRNK GETMGHNNTN APVARFPEVS RPKLEGGKRF VMRSEFQPAG DQPTAIAELS QGVRAGERDQ VLLGATGTGK TFTMAKVIEQ TQRPAIILAP NKTLAAQLYG EFKGFFPENA VEYFVSYYDY YQPEAYVARS DTYIEKESQI NEAIDRMRHS ATRALLERDD VIIVASVSCI YGIGSVETYS AMTQDMVVGQ LYDQREFLAE LVAQQYRRLD AAFQCGGFRV RGDLVEVWPA HLEDRAWRFD FFGNELESIT EFDPLTGAKT DSFKQIRIYA NSHYVTPRPT LQQAIKGIRT ELQTRLKQLA DEGKLLEAQR LEQRTNFDLE MLEATGVCNG IENYSRYLTG RAPGEPPPTL FEFIPDNAIV FADESHVSVP QIGGMYRGDF RRKFTLAEHG FRLPSCMDNR PLKFEEWDAM RPQSVFVSAT PAQWELDQTG GVFTEQVIRP TGLLDPQVEI RPVEMQVDDL LDEVRKVAAA GMRTLVTTLT KRMAEDLTEY LHEQGIRVRY MHSDIDTIER IEILRDLRLG AFDVLVGINL LREGLDIPEC GLVAILDADK EGFLRSETSL IQTIGRAARN ADGRVIMYAD RITGSMERAM AETERRRQKQ VAYNEAHGIT PQTVRKNVED VLAGLWQGDT DQARITTRVE KPMVGANLAA HLDALRAQMR KAAENLEFEE AARLRDEVKR LEAVELAIAD DPLARQSAIE EAAEAAVKSS GRSTAGRAGQ RGGNKRSRRR G
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