| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1578 |
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| Symbol | |
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| ID | 4580841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 1553348 |
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| End bp | 1554802 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 639768894 |
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| Product | peptidase S13, D-Ala-D-Ala carboxypeptidase C |
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| Protein accession | YP_915374 |
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| Protein GI | 119384318 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.196068 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0208813 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGGAT GGACGCGGCG CGGCTTCATG GCGGGGCTGG GGCTTCTGGC CCTGGCGCCG
CGCATGGCGC CGGCGCAGCA AAGGCCGGCG GTGCGGCCCA CGGGCTTCGA CCCCGAGGCG
CTGATCGCTG CCGCGGGCCT TGGCGGAGCG GTGGCCTATG CGGTGATCGA CCCGGCCTCG
GGGCAGGTGC TGGCCGAGCG CCAGCCCGAG CCTTCCATGG CGCCGGCAAG CACGCTGAAG
GCCGTGACGG CGCTTTACGC GCTGGACCGG CTGGGCGAGA GGCACCGTTT TGCCACCCGC
GTCATCCGGG CCGGCAATAC GCTGATCCTG GCGGGTGGGG GCGATCCGGT GCTGGACACC
GATGCGCTGG ACGAACTCGC CGCCGCGGCC GTCGCGGATG AACAGGCCGC CGGCCGCCCG
GCACCGACCG CATTCGCCGT CTGGGGCGGG GCGCTGCCGC GTATCGGCCG GCTGGACCCG
GCGCAGGACG AGCATCTGCC CTACAACCCC TCGATCTCGG GGATGATCCT GAACTTCAAC
CGCGTGCATC TGGACTGGCG GCGCGGCGAC AAGGGCTATC AGCTTTCGTT GCAGGCGCGG
GGCCGCAAGC TTTCGCCCCG GGCCTATACG ACCGCCATCG CGGCGGTGGA CCGCGGGCTG
CCGCTGTTCA CCTATGAGGC GGGCAAGTTG GAAAGCTGGA CCATCGCGCG CAGCAGCCTG
GGCAAGTCCG GCAGCCGCTG GCTGCCCGTC CGCCGCCCCG AGCTTTACGC CGGCGACGTG
TTCCAGACGC TTTGCCGCGC GCGCGGTCTG GCGCTGCCCA ATCCCGAGGT GATCGAGATC
CTGCCCGAAG GGGCCGAGAT CGCGCGCCAC GAAAGCCCGG ACCTGCGCCG GATCGTGCGG
GACATGATGG AATATTCGAC CAACCTGACC GCCGAGGTGA TCGGCCTTGC CGCCAGCCGC
GCGGGCGACG TGGGGGCCTC GGCCGCGGCC ATGGCGGATT GGCTGCGCGG GCAGGGGATC
GGCGGCGACT TCGCCTTTCA CGACCATTCC GGCCTGTCGC CCCTGAACCG CGTCAACGCG
GGCATGCTGG CCGCGCTGGT GGCCGGGCCG GGCCGGACGC GCGATCTGCG CGGGCTGATG
AAGCTGATCC CGCTGCGGGA CGCGCGCGGC AAGCGCAAGG ACAGCGACAT CCGCATCGAG
GCCAAGACCG GGACGCTGAA CTTCGTCTCG AACCTGGCGG GTTATGCACA GGCCCCCGAC
GGCCGGGAAC TGGGCTTTGC CATCCTGACC GCCGACGAGG ATCGCCGTGC CGCAAGCGAG
GGCCAGGAGC TGCCCGAGGG CGTCGCCGGC TGGACCAAGC GTTCCAAGGC GTTGCAGCAG
GCGCTGATCG AGGGCTGGCT GGGCGAATTC GCCGGGCAGG CCCCCGTCGC CTCGGTGCAG
GGGGCGACGC TTTAA
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| Protein sequence | MNGWTRRGFM AGLGLLALAP RMAPAQQRPA VRPTGFDPEA LIAAAGLGGA VAYAVIDPAS
GQVLAERQPE PSMAPASTLK AVTALYALDR LGERHRFATR VIRAGNTLIL AGGGDPVLDT
DALDELAAAA VADEQAAGRP APTAFAVWGG ALPRIGRLDP AQDEHLPYNP SISGMILNFN
RVHLDWRRGD KGYQLSLQAR GRKLSPRAYT TAIAAVDRGL PLFTYEAGKL ESWTIARSSL
GKSGSRWLPV RRPELYAGDV FQTLCRARGL ALPNPEVIEI LPEGAEIARH ESPDLRRIVR
DMMEYSTNLT AEVIGLAASR AGDVGASAAA MADWLRGQGI GGDFAFHDHS GLSPLNRVNA
GMLAALVAGP GRTRDLRGLM KLIPLRDARG KRKDSDIRIE AKTGTLNFVS NLAGYAQAPD
GRELGFAILT ADEDRRAASE GQELPEGVAG WTKRSKALQQ ALIEGWLGEF AGQAPVASVQ
GATL
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