Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_1569 |
Symbol | |
ID | 4580871 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | + |
Start bp | 1542634 |
End bp | 1544238 |
Gene Length | 1605 bp |
Protein Length | 534 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 639768885 |
Product | extracellular solute-binding protein |
Protein accession | YP_915365 |
Protein GI | 119384309 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.199164 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0577205 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCGAC TGTTCCTGAC GACCGCATTG GTTGCAGGCC TGGCCCTGCC CGCACTGGCG GTCCAGCCCG CCGAGGGCGA GAAGCTGGCC GAGAACCAGT CCTATACCTT CTGGCTGCTG GACGCGATCA AGACCGCCGA CCCGCAGAAG AACACCGATG TCGAGGGCTC GGACATCATC CGCCAGCTGT TCGAGGGCCT GCTGAACGAG GACGACAAGG GCGCGCCGGT CCCCGGCGTC GCGAGCGGGT TCGACCTGTC CGAGGACAAG CTGACCTATA CCTTCCACCT GCGCCCCGAG GCGAAATGGT CGAATGGCGA TCCGGTCGTA GCGGGCGATT TCGTCTATGC CTGGCGGCGG CTCGCCAATC CCGAGACCGC CTCGGAATAT GCCTGGTTCA TGGAGCTGAT GAACGTCGAG AACGCCAGCG CCGTGGTCAA GGGCGAGAAG CAGCCCGAGG AACTGGCCGT CAAGGCGCTG GACGACCACA CGCTGGAGGT CAGGCTTTCC ACGCCGACGC CCTATTTCCC CAAGATGGTC ACGCATGGCT CGACCTTCCC GGTCAACCAG AAGGTCGTCG AGGCCGAGGG CGACAACTGG ACCCAGCCCG GCAAGCTGGT CGGCAACGGC GCCTATGTGC TGAAAAGCCA CGACCTGGGC GTGCAGATCA GCATGGAGAA GAACCCGGAA TACTGGGACG CCGCCAATGT CGTGATGGAG CGGATCAAGG GCCTGACGGT GAACGACAAC AACGTCGCGC TGACCCGCTA TCAGGCGGGC GAGCTGGACC GGGTGCAGAT CCCCGCCGGG CAATATCCGC GGCTCAAGGA GCAGTTTCCC GACCAGGCGA TCTCGATTCC CTATTCCTGC ACCTATGCCT ATCTGCTGAA CGTCAGCGAG AAAGGCCCCG AGGCGCTGAA GGACGTGCGG GTGCGCAAGG CGCTCAGCTA TGCCATGCAG CGCGACGTGG TGGTGAACCA GATCCTGCAG GGCGGCCAGA AGCCCGCCTA TAACTGGTCG CATTGGGCCA TCGAGGGCTT CCAGATGCCC GAGATCGACT ATGCGGGCTG GTCCCAGGCC GAACGGCTGG AAAAGGCCAA GGCGCTTCTG GCCGAGGCCG GCTACGGCCC CGGCAAGCCG CTGAAGCTGA CCCTGCAATA CAATACCGAC GAGAACCACA AGAAGATCGC CGTCGCCGCG CAGCAGTTCT ACAAGCAGAT CGGCGTCGAG CTGACCCTGA ACAACGTGGA ATGGAAGGTG CATACCGACC GCATGCAGTC GCAGGATTTC GAGATGGCCC GCTATGCCTG GTGCGCCGAC TATAACGAGG CCTCGACCTT CCTCGACTAT TTCCGCAGCA CGGGCATGAA CTACGGCAAG TATTCCAACC CGGAATTCGA CAGGCTGATG GATCAGTCCA AGACCTCGGA AGACCCGAAC GCGCAATATA CCGCGGCCGA GAAGATCCTG GCCGAGGACA TGCCGCTGGT CCCGGTCTAT CAATATTCCA AGGTCGACAT GATCCGCGAC GACATCAAGG GCCTGCCGAC CGAGAACGTG ATGAACGACT GGTATGCCAA GGACATCTAC CGCATCCAGA AATAA
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Protein sequence | MTRLFLTTAL VAGLALPALA VQPAEGEKLA ENQSYTFWLL DAIKTADPQK NTDVEGSDII RQLFEGLLNE DDKGAPVPGV ASGFDLSEDK LTYTFHLRPE AKWSNGDPVV AGDFVYAWRR LANPETASEY AWFMELMNVE NASAVVKGEK QPEELAVKAL DDHTLEVRLS TPTPYFPKMV THGSTFPVNQ KVVEAEGDNW TQPGKLVGNG AYVLKSHDLG VQISMEKNPE YWDAANVVME RIKGLTVNDN NVALTRYQAG ELDRVQIPAG QYPRLKEQFP DQAISIPYSC TYAYLLNVSE KGPEALKDVR VRKALSYAMQ RDVVVNQILQ GGQKPAYNWS HWAIEGFQMP EIDYAGWSQA ERLEKAKALL AEAGYGPGKP LKLTLQYNTD ENHKKIAVAA QQFYKQIGVE LTLNNVEWKV HTDRMQSQDF EMARYAWCAD YNEASTFLDY FRSTGMNYGK YSNPEFDRLM DQSKTSEDPN AQYTAAEKIL AEDMPLVPVY QYSKVDMIRD DIKGLPTENV MNDWYAKDIY RIQK
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