| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1565 |
|---|
| Symbol | |
|---|
| ID | 4580867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 1539487 |
|---|
| End bp | 1540110 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639768881 |
|---|
| Product | tripartite ATP-independent periplasmic transporter DctQ |
|---|
| Protein accession | YP_915361 |
|---|
| Protein GI | 119384305 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.124017 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0201638 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGCCC TGTTGGGGCT TTCTCGCGGC ATTGACCGCG TCAATTCGGC CATCGGCCGA
AGCGTGAGCT GGCTGATCCT GGTCGCCGTG CTGGTCAGCG CCGGGAATGC GGTCATCCGC
AAGGTGCTGA ACACCTCGTC CAACGCCTGG CTGGAACTGC AATGGTATCT TTTCGGTGCC
GCCTTCCTCG GCGCGGCGGC CTATACGGTG AAGGAGAACG AGCATATCCG CATCGACATC
ATCTATGGCA TCTGGAGTCG CCGCCGCCAG CACTGGATCG ACCTGATCGG GCATGTCTTC
TTCCTGATGC CCTTCGTCAC GCTGATGATC TGGTATCTCT ACCCCTGGGC GATGCGCTCC
TATTACCGGG GCGAGGTCTC GACCAATGCC GGGGGACTGG TGCTGTGGCC CGCCAAGATG
CTTCTGCTGG CCGGCTTCAT CATGCTGTTC TTCCAGGGTA TTTCCGAGAT CATCAAGAAG
ATCGCCGTCA TGCGCGGCAT CATCGAAGAC CCCAACCCCT TCGTCTCGGC GCATGAGGCC
GCGGCGATGG AGGGCGACAT CATGGTCCGC GAAATGGCCG CCGCGATCGA GGAAGACACC
CAGGACGGAG AGACCCGCAA ATGA
|
|---|
| Protein sequence | MGALLGLSRG IDRVNSAIGR SVSWLILVAV LVSAGNAVIR KVLNTSSNAW LELQWYLFGA
AFLGAAAYTV KENEHIRIDI IYGIWSRRRQ HWIDLIGHVF FLMPFVTLMI WYLYPWAMRS
YYRGEVSTNA GGLVLWPAKM LLLAGFIMLF FQGISEIIKK IAVMRGIIED PNPFVSAHEA
AAMEGDIMVR EMAAAIEEDT QDGETRK
|
|---|
| |