| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1563 |
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| Symbol | |
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| ID | 4580865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 1536368 |
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| End bp | 1537492 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639768879 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_915359 |
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| Protein GI | 119384303 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0179378 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0467055 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAAA CCAACCAGTT CGACCGGCGC GCCTTTCTGA CCCGCGCCAC GGTCGGCGGC
GCCACGGCGG CTGCCGGGGC CGCTCTGGCC GCGCCCGCCA TCGCGCAGGA AATGCCCGAG
GTGAAATGGC GCCTGACCTC GGCCTTCCCG AAGTCGCTGG ACACCATCTA TGGCGGGGCC
GAGGTGCTGT CGAAACAGCT GGCCGAGGCC ACCGACGGCA AGTTCCAGCT TCAGGTCTTT
GCGGGCGGCG AGATCGTCCC CGGCCTGCAG GCCCAGGACG CCGTCACCGA CGGCACGGTC
GAGGCCTGCC ACACCGTCGG CTATTACAGC TGGGGCAAGG ACCCGACCTT TGCACTGGGT
TCGGCCGTGC CCTTCGCGCT GTCGGCCCGG GCGATGAATG CCTGGCAATA CCATGGCGGC
GGCATCGACC TTTACAACGA ATTCCTCGCC AACCATAACA TCTTTGGCCT GCCGGGAGGC
AATACCGGCG TGCAGATGGG CGGCTGGTTC CGCAAGGAAA TCAACGCCGT GGGCGACCTC
CAGGGCCTCA AGATCCGCGT CGGCGGCTTT GCCGGCCGGG TGCTGGAGCG CCTGGGCGCG
GTGCCGCAGC AGATCGCCGG CGGCGACATC TATCCGGCCT TGGAAAAGGG CACCATCGAC
GCTTCGGAAT GGGTCGGTCC CTATGACGAC CTGAAGCTGG GCTTCTACAA GGTCGCGCCC
TATTACTACT ATCCCGGCTG GTGGGAAGGC GGACCGACGG TGCATTTCTT CTTTGCCAAG
GAGAAATACG AATCGCTGCC CGAGAACTAC AAGTCGCTGC TGCGCACCGC CTGCCAGGCG
GTCGACGCCA ACATGCTGCA GAAATACGAC CACCTGAACC CGATCGCCCT GAAGGAACTG
GTGGCCTCGG GGGCGCAGCT GCGCCCGTTC AGCGCCGAGA TCCTGGATGC CTGCTACAAG
GCCGCGAACG AGGTCTATGC CGAGCTGGAA GCCTCGAACG AACCCTTCAA GAAGATCTGG
GATTCGATCA AGGTGGCACG GGGCGACTGG TATCTCTACA ACCAGACCGC TGAATATACC
TATGACACCT TCATGATGAT CCAGCAGCGC AACGGCACGC TCTGA
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| Protein sequence | MKKTNQFDRR AFLTRATVGG ATAAAGAALA APAIAQEMPE VKWRLTSAFP KSLDTIYGGA
EVLSKQLAEA TDGKFQLQVF AGGEIVPGLQ AQDAVTDGTV EACHTVGYYS WGKDPTFALG
SAVPFALSAR AMNAWQYHGG GIDLYNEFLA NHNIFGLPGG NTGVQMGGWF RKEINAVGDL
QGLKIRVGGF AGRVLERLGA VPQQIAGGDI YPALEKGTID ASEWVGPYDD LKLGFYKVAP
YYYYPGWWEG GPTVHFFFAK EKYESLPENY KSLLRTACQA VDANMLQKYD HLNPIALKEL
VASGAQLRPF SAEILDACYK AANEVYAELE ASNEPFKKIW DSIKVARGDW YLYNQTAEYT
YDTFMMIQQR NGTL
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