| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1561 |
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| Symbol | |
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| ID | 4580863 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 1534673 |
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| End bp | 1535650 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 639768877 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_915357 |
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| Protein GI | 119384301 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00259219 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0467055 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCACG CGCTGGCGCT GGCGCGGCGC GGGTTGGGCA ATGTCTGGCC CAATCCGGCG
GTGGGCTGCG TGCTGGTGCG CGACGGCGTG GTGGTCGGGC GCGGCTGGAC CCAGCCGGGT
GGGCGTCCCC ATGCCGAGGC GATGGCGCTG GCCCAGGCCG GCGAGGCCGC GCGGGGCGCC
ACCGCCTATG TCACGCTGGA GCCCTGCGCC CATCACGGCA AGACCCCGCC TTGCGCCGAG
GCGCTGGTGC GTTCGGGCAT GGCGCGCGTA GTGACCGCGC TGACCGATCC CGACCCGCGC
GTGACCGGTC GCGGCCATGC CATCTTGCGT GCCGCCGGTA TCGAGGTTGC CGAGGGCGTC
TGCGAGGCCG AGGCGCGCGA GGTCCAGCGC GGCTTTCTAA GCCGCATCCA GCGCGGCCGG
CCGATGCTGA CGCTGAAACT GGCCGCCAGC TTCGACGGCC GCATCGCCAC CGCCTCGGGC
GAAAGCCAGT GGATCACCGG CGCGCAGGCC CGGCGCCATG TCCACGCCCT GCGCCTGGGC
CACGACGCGG TGATGGTCGG CGCCGAGACC GCGCGTGCCG ACCGGCCGGG GCTGAACGTG
CGCGGTTTCG GCCCGGTGCG GCAGCCGGTG CGGATCGTCG TCTCGTCGCG ACGCTTGCCC
GACCTGCCGG GCGAGGGGCC GGAACACGGC CCGCTCTGGC AGGTCGCGGG CGAACCCGAG
GCGTTCATGG CGGAACTTGG CACCCGTGGC CTGACCCGGG TGCTGTGCGA GGGCGGCGGG
GTGCTGGCGG CAAGCCTCTT GCGGGCCGGC ATGGTCGATC AGCTGATCGG CTATGGCGCC
GGGGTGGTTC TTGGCGGCGA CGGCCGGGCC GGGATCGGCG CGCTGGAACT GGAGCATCTG
GCCGACGCAC CGCGCTTCCG GCTGGTCGAG ACGCGCCGGA TCGGGTCCGA CATCATGCAT
CGCTGGCTGC GCGACTAG
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| Protein sequence | MRHALALARR GLGNVWPNPA VGCVLVRDGV VVGRGWTQPG GRPHAEAMAL AQAGEAARGA
TAYVTLEPCA HHGKTPPCAE ALVRSGMARV VTALTDPDPR VTGRGHAILR AAGIEVAEGV
CEAEAREVQR GFLSRIQRGR PMLTLKLAAS FDGRIATASG ESQWITGAQA RRHVHALRLG
HDAVMVGAET ARADRPGLNV RGFGPVRQPV RIVVSSRRLP DLPGEGPEHG PLWQVAGEPE
AFMAELGTRG LTRVLCEGGG VLAASLLRAG MVDQLIGYGA GVVLGGDGRA GIGALELEHL
ADAPRFRLVE TRRIGSDIMH RWLRD
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