| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1506 |
|---|
| Symbol | |
|---|
| ID | 4581102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 1470887 |
|---|
| End bp | 1472872 |
|---|
| Gene Length | 1986 bp |
|---|
| Protein Length | 661 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639768821 |
|---|
| Product | conjugal transfer coupling protein TraG |
|---|
| Protein accession | YP_915302 |
|---|
| Protein GI | 119384246 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.600925 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCGA CCAAGATCCT CTGGGGGCAG ATCTCCATCG TCTTCCTCAT CATTCTGGCC
ACCACCTGGG GAGCGACGCA ATACGTGGCC GCGAGCCTTC GCTATCAGGC ACAGCTGGGC
CCGCCCTGGT TCGTGCTGTT CGGGACGCCC GTCTACTATC CTCCCGCTAT CTTCTGGTGG
TGGTATTTCT ACGAGGCCTA CGCGCCGCCG GTCTTCGCGA CCGGCGGGAT CATCGCTGCC
TCTGGGGGCA TCATCGCGAT CGGCGTAGCC ATCGCCATGT CGGTCTGGCG CGCCCGCGAG
GCCCGCAACG TTGCGACCTA TGGATCAGCC CGATGGGCTG AGAGGGGCGA GGTGAAGGCA
GCCGGACTTC TAGACCCGGA TGGCGTGGTC CTGGGTCGCT ATGAGCGGGA ATATCTGCGC
CACGATGGGC CGGAGCATGT GCTCTGCTTC GCGCCGACGC GCTCCGGCAA GGGGGTAGGG
CTCGTCGTAC CGTCGCTTCT CGCCTGGCCC GGCTCGGCCA TCGTTCATGA CATCAAGGGA
GAGAACTGGC AGTTGACCGC TGGGTTCCGG GCCCGGTACG GTCGGGTCCT GCTGTTCGAT
CCGACCAATC CGAACTCTTC GGCCTACAAC CCCCTGCTGG AAGTGCGCCG CGGGGAGTGG
GAGGTTCGCG ATGTCCAGAA CATCGCAGAT ATCCTCGTCG ACCCAGAGGG GAGCCTGGAA
CGGCGCAACC ATTGGGAAAA GACCAGCCAC AGTCTGCTCG TCGGTGCCAT CCTGCATGTT
CTTTATGCCG AGAAGGATAA GACGCTGGCC GGTGTCGCCA ACTTCCTGTC CGATCCGCGG
CGTCCCGTGG AGTCCACACT CCGCGCCATG ATGCGGACAT CGCACTTGGG CGAGGCGGGG
CCGCATCCCG TGGTCGCCAG TGCTGCCCGC GAGTTGCTCA ACAAGTCCGA GAATGAACGC
TCGGGCGTGC TTTCGACGGC AATGTCTTTC CTTGGCCTCT ATCGCGACCC TGTAGTCTCC
CAGGTCACGC GCCGCTGCGA CTGGCGGATC GGTGACATTG TCGGGGGAGT GCGCCCCGTC
ACGCTGTATC TCGTGGTGCC GCCTTCGGAC ATCAGTCGCA CCAAGCCGCT CATCCGCCTG
ATCCTCAACC AAATCGGCCG ACGCCTGACC GAGGATTTGC AGGGCAAGGA TGATCGTCAT
CGGCTGCTTC TGATGCTTGA TGAGTTCCCG GCGCTCGGTC GCCTCGACTT CTTCGAGAGC
GCGCTGGCCT TCATGGCGGG GTACGGGCTG AAGAGCTTCC TCATCGCCCA GTCGCTGAAC
CAGATCGAGA AGGCCTACGG CCCCAACAAC TCGATTCTCG ACAATTGCCA CGTCCGGGTG
AGCTTCGCGA CCAATGATGA GCGCACGGCC AAGCGGGTGT CCGACGCTCT CGGCACGGCC
ACCGAGATGA AGGCGATGAA AAACTATGCC GGGCACCGTC TGGCGCCCTG GCTCAGCCAT
CTCATGGTGT CCCGGTCGGA AACCGCGCGG GCGTTGCTCA CGCCCGGAGA AATCATGCAG
CTGCCGCCAA CCGATGAGAT CGTCATGGTG GCCGGCACTC CGCCGATCCG GGCGACGAAA
GCACGGTATT ACGAAGATAC GCGGTTTGCC GAGCGGGTCT TGCCGCCACC CAACTTGGTG
GATGTGGGCG CCTCAGGGGA GGATGACTGG AGCAGTCTGG CAGTTCCAGT GCAGGACGAC
GAGCAAGAGC GAGTATCCGA TATGGGAGCG GGGGACGAGG ACCCGACAGC GTCGGAGCGC
CGTCTTCAGC CGGAGCTGGC GCAGCCTCAG ACGGTCGACA GGCAGTCCCC CTTTGAGAAC
GAGTTTGAAT TCGACCCACC CGAGGATGAG GAGGATGGCG CCATCCGCAA TCAGCGCATC
ATGCAGCAGA TGCGCGGTGT CGCGCGTCAG GTCTCACTCA ATCCCGATGA CGGCATGGAG
CTTTGA
|
|---|
| Protein sequence | MSATKILWGQ ISIVFLIILA TTWGATQYVA ASLRYQAQLG PPWFVLFGTP VYYPPAIFWW
WYFYEAYAPP VFATGGIIAA SGGIIAIGVA IAMSVWRARE ARNVATYGSA RWAERGEVKA
AGLLDPDGVV LGRYEREYLR HDGPEHVLCF APTRSGKGVG LVVPSLLAWP GSAIVHDIKG
ENWQLTAGFR ARYGRVLLFD PTNPNSSAYN PLLEVRRGEW EVRDVQNIAD ILVDPEGSLE
RRNHWEKTSH SLLVGAILHV LYAEKDKTLA GVANFLSDPR RPVESTLRAM MRTSHLGEAG
PHPVVASAAR ELLNKSENER SGVLSTAMSF LGLYRDPVVS QVTRRCDWRI GDIVGGVRPV
TLYLVVPPSD ISRTKPLIRL ILNQIGRRLT EDLQGKDDRH RLLLMLDEFP ALGRLDFFES
ALAFMAGYGL KSFLIAQSLN QIEKAYGPNN SILDNCHVRV SFATNDERTA KRVSDALGTA
TEMKAMKNYA GHRLAPWLSH LMVSRSETAR ALLTPGEIMQ LPPTDEIVMV AGTPPIRATK
ARYYEDTRFA ERVLPPPNLV DVGASGEDDW SSLAVPVQDD EQERVSDMGA GDEDPTASER
RLQPELAQPQ TVDRQSPFEN EFEFDPPEDE EDGAIRNQRI MQQMRGVARQ VSLNPDDGME
L
|
|---|
| |