| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1481 |
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| Symbol | |
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| ID | 4580321 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 1441768 |
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| End bp | 1444278 |
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| Gene Length | 2511 bp |
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| Protein Length | 836 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639768796 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_915277 |
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| Protein GI | 119384221 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0386388 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAATC TCGCAGAATA CCGTCACACT GCCTCGCGCC TCGCCGACTA TCTGCCCTGG
GTGGCGCTGG TCGGGGAAGG TGTGGTCCTC AACAAGGACG GCTCGTTTCA GAGGACGGCG
AAGTTTCGGG GGGCCGATCT GGACAGCGCC GTCGCGGCCG AACTGGTCGC GGTCGCCGGA
CGGCTGAACA ACGCTTTCCG TCGCCTCGGT TCCGGGTGGG CGATCTTTGT GGAAGCACAG
CGCTCTGAGG CCGCGACCTA TCCGCTGAGC ACCTTCCCGG ATGCGGCATC GGCGCTGGTC
GATGCCGAGC GCAAGGCCGG TTTCGAGGAG GAGGGGAGCC ATTTCGTATC CGGCTATTTC
CTGACGCTCC TCTGGCTTCC GCCTGCCGAG GACGCGGCGC GCTCAGAATC CTGGCTCTAC
GAGGGCCGCG AAACCTCAGG TGTGAACCCC TGGGAACAGG TGCGCGGTTT CATCGACCGC
ACCGATCGCG TGCTGGCGCT GCTCGACGGC TTCATGCCGG ACTGCCACTG GCTCGATGAC
GCCGCTACGC TGACCTACCT GCATTCGACG ATTTCGACCA ACCGGCATCG CGTGCGCGTA
CCCGAGGTGC CGGTCTATCT CGACGCGCTC TTGCCCGATC AGCCGCTGGC CGGCGGGCTG
GATCCGCGCC TGGGCAATCA GCATCTCCGC GTCCTGACAA TCACCGGCTT TCCCGGCGTC
ACGACCCCGG GCCTGCTCGA CGAGTTGAAC CGGCTGGCCT TTCCCTATCG CTGGTCGACC
CGGGCCATCC TCATGGACAA GCTGGATGCG ACGAAGCTGC TGACCCGGAT ACGTCGTCAG
TGGTTTGCCA AGCGTAAGAG CATCGCCGCG ATCCTCAAGG AGGTGATGAC CAACGAGCAA
TCCGCGCTGG TCGATACCGA TGCCGCGAAC AAGGCGGCTG ACGCGGACAT GGCCCTGCAG
GAACTCGGCG CTGATGTGGC AGGCATGGCC TATGTCACGG CGGCGATCAC AGTCTGGGAC
GAGGACGTCC GCCGCGCCGA CGAGAAGCTG CGGCTGGTCG AGAAGATCGT CCAGTCCCGC
GATTTCACCG CCATGACCGA GACGGTCAAT GCGGTCGATG CCTGGCTCGG AAGTCTGCCC
GGGCATGCCT ATGCCAATGT CCGCCAGCCA CCGATCAGCA CATTGAATCT CGCCCATATG
ATCCCGCTCT CGGCGGTTTG GGCGGGGCCG GAACAGGATG AGCATTTCGG CGACGCTCCA
TTGCTCTACG CCAGGACCGA AGGCTCCACC CCGTTCCGGC TTTCTCTGCA TGTGGGGGAT
GTCGGTCACA CCCTCGTCGT CGGCCCGACC GGCGCGGGCA AGTCCGTGTT GCTGGCGCTG
ATGGCGCTGC AGTTCCGGCG GTACTCGCGC AGCCAGATCT TCGCCTTCGA CTTCGGCGGC
TCGATCCGCG CCGCTTCGCT CGCCATGGGC GGCGACTGGC ATGACCTCGG CGGAGAGCTG
ACCGACGCGG CCGACACCTC CGTATCGCTA CAGCCGCTGG CCCGGATTCA CGAAACGTCG
GAGCGCGCTT GGGCCGCCGA CTGGATCGTC GCCATCCTGA CGCGCGAGAA CATCCAGATC
ACCCCGGATG TGAAGGAACA TATCTGGACG GCACTGACCT CGCTGGCCTC GGCCCCTGTG
GGCGAGCGGA CCATGACCGG CTTGGCGGTC CTGCTGCAGT CCAACGATCT GAAGCAGGCA
CTCCGCGCAT ACTGCGTGGG TGGACCCTAT GGCCGGCTGC TCGATGCCGA GACCGAACAG
CTGGGATCGG CGGATGTGCA GGCCTTCGAG ATCGAGGGGC TGGTGGGAAC CGGCGCGGCG
CCCGCCGTCC TCTCATACCT GTTCCACCGG ATCGGTGATC GGCTCGATGG ACGCCCCACG
CTGCTCATCA TCGACGAGGG CTGGCTCGCA CTCGATGACG ATGCCTTCGC GGAGCAGCTC
CGCGAATGGC TGAAGACGCT GAGGAAGAAG AACGCCTCGG TGATCTTCGC GACGCAGAGC
CTCAGCGACA TCGATGGCAG TACCATCGCG CCGGCGATCA TCGAAAGCTG CCCGACGCGG
CTCCTGCTGC CGAACGAGCG GGCCATCGAG CCCCAGATCA CGGCCATCTA TCGCCGCTTC
GGCCTCAATG ACCGGCAGAT CGAGATCCTC GCGCGGGCCA CGCCCAAGCG CGACTACTAC
TGCCAGTCGC GGCGCGGCAA CCGGCTGTTC GAGCTGGGCC TCAGCGATGT CGGGCTCGCA
CTCTGCGCGG CATCGTCCAA ATCGGATCAG GCGCTGATTG CCGAGATCTG TGCCGGGCAC
GGCCAAGACG GCTTCCTCGA CGCCTGGCTG AAGGCGCATG GCCTCGATTG GGCCGCCGAC
CTGATCCCTG ACCTCACCAA TCTCGCCATC GACGCTGACG GGGCCTCTCC GACCACCGCT
GTTGTTGAGG ACGCCGACAT CGACCTTGAA GAAGAGGAGA TTACACCATG A
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| Protein sequence | MMNLAEYRHT ASRLADYLPW VALVGEGVVL NKDGSFQRTA KFRGADLDSA VAAELVAVAG
RLNNAFRRLG SGWAIFVEAQ RSEAATYPLS TFPDAASALV DAERKAGFEE EGSHFVSGYF
LTLLWLPPAE DAARSESWLY EGRETSGVNP WEQVRGFIDR TDRVLALLDG FMPDCHWLDD
AATLTYLHST ISTNRHRVRV PEVPVYLDAL LPDQPLAGGL DPRLGNQHLR VLTITGFPGV
TTPGLLDELN RLAFPYRWST RAILMDKLDA TKLLTRIRRQ WFAKRKSIAA ILKEVMTNEQ
SALVDTDAAN KAADADMALQ ELGADVAGMA YVTAAITVWD EDVRRADEKL RLVEKIVQSR
DFTAMTETVN AVDAWLGSLP GHAYANVRQP PISTLNLAHM IPLSAVWAGP EQDEHFGDAP
LLYARTEGST PFRLSLHVGD VGHTLVVGPT GAGKSVLLAL MALQFRRYSR SQIFAFDFGG
SIRAASLAMG GDWHDLGGEL TDAADTSVSL QPLARIHETS ERAWAADWIV AILTRENIQI
TPDVKEHIWT ALTSLASAPV GERTMTGLAV LLQSNDLKQA LRAYCVGGPY GRLLDAETEQ
LGSADVQAFE IEGLVGTGAA PAVLSYLFHR IGDRLDGRPT LLIIDEGWLA LDDDAFAEQL
REWLKTLRKK NASVIFATQS LSDIDGSTIA PAIIESCPTR LLLPNERAIE PQITAIYRRF
GLNDRQIEIL ARATPKRDYY CQSRRGNRLF ELGLSDVGLA LCAASSKSDQ ALIAEICAGH
GQDGFLDAWL KAHGLDWAAD LIPDLTNLAI DADGASPTTA VVEDADIDLE EEEITP
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