| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1480 |
|---|
| Symbol | |
|---|
| ID | 4580320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 1440989 |
|---|
| End bp | 1441771 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639768795 |
|---|
| Product | conjugal transfer protein TrbJ |
|---|
| Protein accession | YP_915276 |
|---|
| Protein GI | 119384220 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
|---|
| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.10056 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGCA AGATCACGTT TCGGTTCGCC GGCCCGTCGC TGCTCGCTCT CGCGCTGGCG
ATGCCCATGG CCATGTCGCC CATCGCAGCG CCGCCCGCCC ATGCGCTCTT CGGTATCGGC
GGGGGGCCTT TCATCGTCTA CGACCCGACC AACCACGCGG AAAATCTCCT GACCGCGGCG
CGCGCACTGG AGCAGATCAA CAACCAGATC GCACAGCTCC AGAACGAAGC GCAGATGCTG
ATAAACCAGG CGCGCAATCT CACCAACCTG CCGTATTCCG CGATCCAGCA GATCCAGCAG
AACGTCAGCC GCACGCAGCA ACTCCTGGCG CAGGCGCAAA ACATAGCCTT CGATGTGCAG
AGCATCGACC AGATGTTCCA GCAGGACTAT GGCAACCTCT CCCTGACGGC GACCGACCAG
CAACTGATCG CCGAGGCCCG GTCGCGTTGG GAGAACACCG TCGGTGGCCT GCAGGATGCC
ATGCGCGTGC AGGCCGGAGT CGTTGGCAAT ATCGAAGCCA ATCGCGCCGA GATGTCCGCG
CTCGTGGGGC AGAGCCAGAA CGCGGTTGGC GCTCTGCAGG CCACGCAGGC GGGCAACCAA
CTCCTCGCAC TGCAATCGCA GCAGCTATCG GACCTGATCG CGGTGATCTC GGCAAACGGT
CGCGCCAACG CGCTGACCGA GGCCGAGCGC GCCACCGCTG CAGAACAGGG TCGCATCCAG
CGCGAGCGCT TCCTGACGCC GGGCGCGGGC TATCAACCCG GCAATGCGCA GATGTTCAAC
TGA
|
|---|
| Protein sequence | MTRKITFRFA GPSLLALALA MPMAMSPIAA PPAHALFGIG GGPFIVYDPT NHAENLLTAA
RALEQINNQI AQLQNEAQML INQARNLTNL PYSAIQQIQQ NVSRTQQLLA QAQNIAFDVQ
SIDQMFQQDY GNLSLTATDQ QLIAEARSRW ENTVGGLQDA MRVQAGVVGN IEANRAEMSA
LVGQSQNAVG ALQATQAGNQ LLALQSQQLS DLIAVISANG RANALTEAER ATAAEQGRIQ
RERFLTPGAG YQPGNAQMFN
|
|---|
| |