| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1478 |
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| Symbol | |
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| ID | 4580299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 1439328 |
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| End bp | 1440680 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639768793 |
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| Product | conjugal transfer protein TrbL |
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| Protein accession | YP_915274 |
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| Protein GI | 119384218 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.389823 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTGGAA CCGGCGTCAT CGACAACTTT CTGGGCATCT TCACCAGCTA TATCGACAGC
GGGTTCGGGC TGCTCGGGGG TGAGGTGGCC TTCATCGCCA CCACGCTGAT CGTGATCGAC
GTGACGCTGG CGGCCCTGTT CTGGGCTTGG GGCGCCGATG ATGACATCAT TGCCCGGCTG
GTGAAGAAGA CGCTCTTCGT CGGCGTCTTC GCCTATATCA TCTCCAACTG GAACAACCTC
GCCCGGATTG TCTTCGAGAG CTTCGCGGGC CTCGGTCTGA TGGCCTCGGG CACCGGATTT
TCCGCCGCCG ATCTTTTGCG TCCCGGCCGC GTCGCCCAGA CCGGGCTCGA GGCGGGGCGG
CCGCTGCTCG AAAGCATCTC CGATCTGATG GGCTGGGTCG CGGTCTTTGA GAACCTCGTC
CAGATTCTCT GCCTGTTCTT CGCCTGGGCG CTGGTGATCC TCGCCTTCTT CATCCTCGCG
GTTCAGCTCT TCGTCACACT GATCGAGTTC AAGCTCACGA CCCTCGCGGG CTTCGTGCTG
ATCCCCTTCG GCCTCTTCGG CAAGACCGCC TTCATGGCCG AGCGCGTGCT GGGCAACGTC
ATCTCGTCCG GCATCAAGGT TCTCGTCCTC GCCGTGATCA TCGGCATCGG ATCCACGCTC
TTCGGTCAGT TCACCGCCGG CTTCGGCGGC GTGACGCCGA CCATTGATGA CGCCATGGCG
ATTGTTCTCG CTGCCCTGTC TCTGCTGGGC CTCGGTATCT TCGGCCCCGG CATCGCCTCA
GGTCTGGTGT CCGGCGGGCC GCAACTCAGC GCGGGGGCGG CCATAGGCAC CGGCCTTGCC
GTTGGTGGTG CTGCGATCGG CGCCGGAGGG GCGACCATGC TGGCTGCACG CGGAGCCGGA
TCTGCACTCT CCGGAGGCAC CGCCCTCGCA CGCGGCGGCG CTACCGCGGC GGGTGCTGCC
TCGAGCGCCT ACACGCTTGG CTCGATGGGC GGAGGAGGTC TCCCAGGCGG GATGGCTGGT
GTAGCGCGCG CCGGGGCCGC TGCCGCGGCA TCACCGCTCA AGAAGGCGTC CTCTCGCGCG
GCTGGCGGCA TCCAGTCCAG CTACGCCGAG GGCGTCAAGG GCGGTGTGGT GGCGACGGGC
GGCACCACCT CGATGGGCAC GGTCGGCGGC GCGGCGCCCG AGCCTGGCAG CTCCGGCCCG
TCCGCCACCG ATGGCCCGCC GGCCTGGGCG AAACGCATGC GCCATAGCCA GGCCGTGAGC
CATGGCGTGC GCGCTGCCGC TCATGCCGTC CGGTCCGGCG ACAGCCACGG CTCGGGCTCC
TCCGTCAATC TCTCCGAAAG GGACCGCTCA TGA
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| Protein sequence | MGGTGVIDNF LGIFTSYIDS GFGLLGGEVA FIATTLIVID VTLAALFWAW GADDDIIARL
VKKTLFVGVF AYIISNWNNL ARIVFESFAG LGLMASGTGF SAADLLRPGR VAQTGLEAGR
PLLESISDLM GWVAVFENLV QILCLFFAWA LVILAFFILA VQLFVTLIEF KLTTLAGFVL
IPFGLFGKTA FMAERVLGNV ISSGIKVLVL AVIIGIGSTL FGQFTAGFGG VTPTIDDAMA
IVLAALSLLG LGIFGPGIAS GLVSGGPQLS AGAAIGTGLA VGGAAIGAGG ATMLAARGAG
SALSGGTALA RGGATAAGAA SSAYTLGSMG GGGLPGGMAG VARAGAAAAA SPLKKASSRA
AGGIQSSYAE GVKGGVVATG GTTSMGTVGG AAPEPGSSGP SATDGPPAWA KRMRHSQAVS
HGVRAAAHAV RSGDSHGSGS SVNLSERDRS
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