| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1438 |
|---|
| Symbol | |
|---|
| ID | 4580493 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 1407734 |
|---|
| End bp | 1409686 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639768754 |
|---|
| Product | pathogenesis-related protein |
|---|
| Protein accession | YP_915235 |
|---|
| Protein GI | 119384179 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0692667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.776822 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACAGACG TGACCGACGC CACCCGCGAC GCGGGCGCTG ACGCGACGAT TCGCGCGTGC
CTGTCCCTTG ATCAGCCGCG CAGCTTCTTT CTCTTTGCCG GGGCGGGATC TGGAAAGACG
CGATCTCTCA AGGAGGCACT TGAGGGATTG GACACACAGA CCCTGACCAC CTTGCGCAAA
CACAGCCGCA AGATCGCCGT CATCACCTAT ACTAACGCCG CCGCAGATGA GATCACACGC
CGCGTCAAGG CCGATCCGGT GTTTCAGGTA CAGACCATCC ACAGCTTCGC TTGGTCGCTC
ATTGAGGGGC GCACGGCGGA TATTCGGGGC TGGCTAGAGA GCAACCTGCG GACAGAAATT
GCCGAGATCC AGGCAGCCCA CGCGAAGGGC CGTGCGGGCA CCGACGCCCA TGACAAACGC
GAGAAGAAGA TGGCCTCCAA GACGAAGCGT CTGGAGCGCC TGGCTGAAAT TCGCGCCTTC
ACCTATGCAC CCGAGGGGGA CAATTTCGGC CGCGATGCGC TGCAACATAC CGAAGTCATT
GCGCTCGCCG CGCATTTCCT GACTGAAAGC GAGACGTTTC AGAACATCGT TCTGGCGCGC
TACCCGTTCA TCCTAATCGA TGAGAGTCAG GACACGATGA AACCGCTGAT GGAGGCGCTC
TTGACCTTCG AGGCGCGCCA TCGCGGCCGC ATCGCCCTAG GGCTGCTCGG GGACACGATG
CAGCGTATTT ATACCGATGG TTTGCGCGAT CTTGACCAAC GAGTGGGGGA TTTTTCGCAA
CCGGCCAAAC AGATGAACCA CCGCAGCCGC AAGCGGATCG TGGACCTGGC GAATTCGATC
CGGCGCGACG ATGATGGCCG CCAGCAGCGG GCGCGCGAAG ACAAACCGGG TGGCACCGTG
CGTGTCTTTA TTGCGCCAAG CGACGGCACA GATCGCGCAG TCTTCGAGGC CTCCGCCCGT
GCAGAAATGG CCCGCATCAC CGGAGATTCC GCGTGGCAGA ACGCGGAGGC GATCAAGACC
CTCACGATCG AGCGTCACAT GGCCGCCGCA CGGCTTGGTT TCAGTGAGTT GTTTGAGCCC
CTGAGCAAAC CCGATAAGCT CAAGGACGGG TTTCGAGACG GCACCTTACC CGCGATGCGG
CTTTTCACCC ACCGGGTCTT GCCTCTGGTG ACGGCACAAA GGAATGGGGA TGCCTTTGCC
GCGATGGCAG TGCTGCGCGA CGGCTCACCG CTGGTCGATA AGAGAGGTAT CCGGGAGGGG
GGCGGGGGGC AGGCCACTGG CCTCGACGCG GCGCGGGCGG GCGTTGCGGC GCTGATGACG
CTATTTAATG ACGAACCAGA TCCGAGTTGT GCCGACGTGT TGGCAGTCGT GGCCGAGCAC
CGGTTGTTCC CGATCCATGA CCAGCTTCGG GCCTGTTTGC CTGACGACAA TCTGGTGGCC
CAGGACATGG CCGATATCCT TGCTGAGCTT GATCCCTTGT TTGACGAGCT GGACCTCACT
ACGCCCGAGG GCACACCACC CGCTGAAACC ACCATCACTG AGGCCTGGAC GCAGGCGCTT
GAGGCCCGGT TTTCCCAAGT GGCGCGCTAC CTCGCCTATG TCGAAGACCG CAGCCCCTAT
GGCACCCACC AAGGGGTCAA GGGGCTCGAA TTTCCTCGGG TCATGGTGAT CGCCGACGAT
GCACACACGC GCTTCAAAGG CCTTGCATCT TACGAGACGC TGTTTGGTGT GAAACCCTTA
GGCCCAGCCG CCCAGAAAAA GGCGGACAAC GGCGAGGAAA CCACGATCGA GCGCACGCGC
CGCTTGCTCT ACGTCACCTG TACCCGCGCA GAAGAGAGTC TCGCGCTTGT GCTCTACTCC
GAAGCCCCCG ACACGATCCG AAGGTTTCTG ATCTCCAACG GGTGGATGGC CGAGGACGAG
ATCGTGATAG CTGCGACTGA CGGGACCCAT TAA
|
|---|
| Protein sequence | MTDVTDATRD AGADATIRAC LSLDQPRSFF LFAGAGSGKT RSLKEALEGL DTQTLTTLRK
HSRKIAVITY TNAAADEITR RVKADPVFQV QTIHSFAWSL IEGRTADIRG WLESNLRTEI
AEIQAAHAKG RAGTDAHDKR EKKMASKTKR LERLAEIRAF TYAPEGDNFG RDALQHTEVI
ALAAHFLTES ETFQNIVLAR YPFILIDESQ DTMKPLMEAL LTFEARHRGR IALGLLGDTM
QRIYTDGLRD LDQRVGDFSQ PAKQMNHRSR KRIVDLANSI RRDDDGRQQR AREDKPGGTV
RVFIAPSDGT DRAVFEASAR AEMARITGDS AWQNAEAIKT LTIERHMAAA RLGFSELFEP
LSKPDKLKDG FRDGTLPAMR LFTHRVLPLV TAQRNGDAFA AMAVLRDGSP LVDKRGIREG
GGGQATGLDA ARAGVAALMT LFNDEPDPSC ADVLAVVAEH RLFPIHDQLR ACLPDDNLVA
QDMADILAEL DPLFDELDLT TPEGTPPAET TITEAWTQAL EARFSQVARY LAYVEDRSPY
GTHQGVKGLE FPRVMVIADD AHTRFKGLAS YETLFGVKPL GPAAQKKADN GEETTIERTR
RLLYVTCTRA EESLALVLYS EAPDTIRRFL ISNGWMAEDE IVIAATDGTH
|
|---|
| |