| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1115 |
|---|
| Symbol | |
|---|
| ID | 4580449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 1092414 |
|---|
| End bp | 1093670 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639768434 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_914919 |
|---|
| Protein GI | 119383863 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1060] Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes |
|---|
| TIGRFAM ID | [TIGR00423] radical SAM domain protein, CofH subfamily
[TIGR03551] 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCA TCCCCCTGCC GGCGGGCGAT CTGTCGGAAC TGCGCCACGC CAGCCCCAGG
GTCCGGGCGA TTCTGGAAAA CGTCCTGTCG GGCGGCGAGG CCAGCGAGGC CGAGGGCGTC
GCCCTGTTCC GCGCCGAGGG CGCCGACAAG CCCGCGCTCT ATGCCGCAGC CGACGAGATG
CGCCGCCGCG CCAATGGCGA CCGGGTCAGC TTCGTCGTGA ACCGTAACAT CAACTTCACC
AATATCTGCT ACATGGGTTG CCGTTTTTGC GGCTTTGCCA AGCGGTCCGA GGATGAGGGC
GCCGAATTCC TGAGCCTGGG CCAGGTGGTC GCCCGCGCGC AGGAAGCCTG GGACCGCGGC
GCGACCGAGG TCTGCATCCA GGGCGGGCTG CATCCGAAGA TGGAGGGCGA TCACTATCGC
CGCATCGTGC TGGCGATCAA GGATGCGCTG CCCGACATGC ATATCCACGC CTTTTCGCCC
TTCGAGATCT GGTATGGCGC CTCGAAGTCG AAGATGGGCT ATCACGAGTT TCTGGCCGAC
CTGAAGGCGG CGGGCCTGGG CTCGATCCCC GGCACGGCGG CCGAGATCCT AGATACGGAG
ATCCGCCAGC AACTGACCAG GAACAAGCTG TCCACCGAAC GCTGGGTCGA GATCGTCCGG
GCCGCGCATG AGGTCGGCAT CCCCACGACC GCGACGATCA TGTACGGCCA TATCGACGGG
CCGGAGCACT GGGCCGCGCA TATCGCGCTT TTGCGCAGCA TCCAGAAGGA TACGGGCGGG
TTTACCGAGC TGGTGCCGCT ATCCTTCGTC CATACCGAAT CGCCCCTTTA CACGCAGGCG
CCGGATCGCG TGCGCCCCGG ACCGACCGCG GATGAGGTGG ACAAGATGCA TGCCGTCAGC
CGGCTGATGC TGGCCGGCTG GATCGACAAC ATCCAGGTAA GCTGGACCAA GCTGGGTCCA
GCGCGCGCGC AGCAAATGCT GTCGCGGGGC GTCAACGACC TGGGCGGCAC GCTGATGAAC
GAAAGCATCT CGCGTGCCGC GGGTGCCAGC CACGGGCAGG AAATCACCGC GCATGAGCTG
GTGCAGATGA TCCGCGCCTC GGGCCGTGTG CCCGTGCGCC GCAGCACGGT CTACGACATC
CGCGAGGTCT ATGACGACCA CGACCCGCAG GCGCTGGCCC CCCTGGTCGC GCGCAGCGGC
GCCGGGCCCC TGGATTTCCT GAACATGTTC CCCGAACGCA TCGAGGCTGC CGAATGA
|
|---|
| Protein sequence | MTIIPLPAGD LSELRHASPR VRAILENVLS GGEASEAEGV ALFRAEGADK PALYAAADEM
RRRANGDRVS FVVNRNINFT NICYMGCRFC GFAKRSEDEG AEFLSLGQVV ARAQEAWDRG
ATEVCIQGGL HPKMEGDHYR RIVLAIKDAL PDMHIHAFSP FEIWYGASKS KMGYHEFLAD
LKAAGLGSIP GTAAEILDTE IRQQLTRNKL STERWVEIVR AAHEVGIPTT ATIMYGHIDG
PEHWAAHIAL LRSIQKDTGG FTELVPLSFV HTESPLYTQA PDRVRPGPTA DEVDKMHAVS
RLMLAGWIDN IQVSWTKLGP ARAQQMLSRG VNDLGGTLMN ESISRAAGAS HGQEITAHEL
VQMIRASGRV PVRRSTVYDI REVYDDHDPQ ALAPLVARSG AGPLDFLNMF PERIEAAE
|
|---|
| |