| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1108 |
|---|
| Symbol | |
|---|
| ID | 4580442 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 1083927 |
|---|
| End bp | 1085582 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639768427 |
|---|
| Product | acyl-CoA synthetase |
|---|
| Protein accession | YP_914912 |
|---|
| Protein GI | 119383856 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAT ACGACGAGGG GCTGGAACGA GCGGCGGCCA ACCACCAGCC GATGACGCCC
ATATCCTATC TGCGGCGGAC GGCGCGGATC CATCCCGACC ACCCGGCGGT GATCCATGGC
CGCCAGCGCC ACGGCTATGC CCGGCTCTGG GCCGATTGCT GCCGGCTGGC CTCGGCGCTG
CTGGGCCGGG GGATCGGCCG GGGGGATACC GTCTCGGTCC TGCTGTCGAA CACGCCGCCG
ATGATCCACG CCCATTTCGG CGTGCCGATG GCCGGGGGCG CGGTGCTGCA TTCGATCAAC
ACCCGCTCCG ATCCCGCCAC CGTGGCGTTC CAGCTGGACC ACGCGGAAAG CCGCGTCCTG
ATCGTGGATC GCGAGTTCTC GGCAATGGCC GCCGAGGCGC TGGCCCTGGC CGGGGTGCGG
CCGCTGGTCG TCGACTTCGA CGATGCCGAA TATCCCGACG ATGCCCCCCA TCCCAAGGGC
GAACCCATCG GCAGCCTCGA CTATGAGCAG CTGCTGGCCG AGGGCGACCC GGATTTCGCC
GCCACCCCGC CCGGCGACGA ATGGGACGCG ATCTCGCTGA ACTATACCTC GGGGACCACC
GGCAATCCCA AGGGCGTCGT CTACCACCAT CGCGGTGCGG CGCTGATGGC GTTGAACAAC
GTCATCCATG CCGGGATGGG CCGGCATCCG GTCTATCTGT GGACCCTGCC GATGTTTCAC
TGCAACGGCT GGTGCTTTCC CTGGACGGTG CCGGTGCAGG CGGGCACGCA GGTCTGCCTG
CGCTGGGTCC GGGCGGGGGC GATCTTCGAC GCCATCGCGG ATCACGGCGT CACGCATCTG
TGCGGGGCGC CCATCGTTAT GTCCACGCTG CTGAACGCTG CGGCCGACCG GAAACGCGGC
TTTCCGCAGC AGGTGACGTT CAACACCGCC GCCGCGCCGC CGCCCGAGAC GGTGCTGCAG
GCCATGGCGA AGGCCGGCTT CGGGGTCACC CATCTTTACG GCCTGACCGA GACCTATGGC
CCGGCCGTGG TGAACGAATG GAATCCCGGT TGGGACGGCT TGCCGCCTTC CGGGCAGGCG
GCGCGCAAGG CCCGGCAGGG CGTGCGCTAC CTGTCGCTGG ACGAACTGGC GGTGATGGAC
CCCGAAACCC TGCAGCCCGT GCCCGCCGAC GGCCGGACGC TGGGCGAGGT GATGTTTCGC
GGCAATGTGG TGATGAAGGG CTATCTGAAG AACCCCGAGG CCACGGCGGC GGCCTTTGCC
GGCGGCTGGT TCCATTCCGG CGACCTGGCG GTGATGCATC CCGACGGCTA TGTCCAGCTC
AAGGACCGCT CCAAGGACAT CATCATCTCG GGCGGCGAGA ACATCTCCTC GATCGAGGTC
GAGGAACAGC TCTACCGCCA TCCCGCCGTC GCGCTTTGCG CCGTGGTCGC CATGCCCAGC
GAGAAATGGG GCGAGACCCC CTGCGCCTTC GTGGAGCTGC GCGAGGGCGG CGAGGAGACC
GAGCCCGGCC TGATCGCGCA TTGCCGCGCC GGGCTTGCGG GCTACAAATG CCCGTCGCGG
GTGGTGTTCG GGCCGCTGCC CAAGACCTCG ACCGGCAAGA TCCAGAAGTT CGCCCTGCGT
GCGCGGGCGG CGGAACTGGC GCGGGCAATG ACCTGA
|
|---|
| Protein sequence | MTEYDEGLER AAANHQPMTP ISYLRRTARI HPDHPAVIHG RQRHGYARLW ADCCRLASAL
LGRGIGRGDT VSVLLSNTPP MIHAHFGVPM AGGAVLHSIN TRSDPATVAF QLDHAESRVL
IVDREFSAMA AEALALAGVR PLVVDFDDAE YPDDAPHPKG EPIGSLDYEQ LLAEGDPDFA
ATPPGDEWDA ISLNYTSGTT GNPKGVVYHH RGAALMALNN VIHAGMGRHP VYLWTLPMFH
CNGWCFPWTV PVQAGTQVCL RWVRAGAIFD AIADHGVTHL CGAPIVMSTL LNAAADRKRG
FPQQVTFNTA AAPPPETVLQ AMAKAGFGVT HLYGLTETYG PAVVNEWNPG WDGLPPSGQA
ARKARQGVRY LSLDELAVMD PETLQPVPAD GRTLGEVMFR GNVVMKGYLK NPEATAAAFA
GGWFHSGDLA VMHPDGYVQL KDRSKDIIIS GGENISSIEV EEQLYRHPAV ALCAVVAMPS
EKWGETPCAF VELREGGEET EPGLIAHCRA GLAGYKCPSR VVFGPLPKTS TGKIQKFALR
ARAAELARAM T
|
|---|
| |