Gene Pden_1100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_1100 
Symbol 
ID4578796 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp1075249 
End bp1076409 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content64% 
IMG OID639768419 
Productmajor facilitator transporter 
Protein accessionYP_914904 
Protein GI119383848 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0738] Fucose permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGGCA CAGATTTTCC GCAGCGCGAG CGGATCACCC TGTTGGCGTG CTTTCTTGCG 
GGTGGCCTTG GCATCGGCAG TTGGGGCGCC AACCTGCCGG CGTTGGGTCG GCGGGCAGGG
TTGGATGAAG GTGCGCTGGG GCTGGTTCTG CTATCCTTCG CGGCCGGCGC TATCCTGGCG
ATGACCAAGG CGCCGCCGGT GATCGCCAGG ATCGGGGCCG AGCGGCTTTC GGTAATCGCC
GCCGGATTGT TCGGGCTGGG TATCATTGGC ATCGGCTGGG TGACGCAGAT GGCCGCCGCG
GTGATCCTGG CAAGCCTTGC CGGTCTCGTC TTTGGTGCGC TGGACGTGGC GATGAACAGC
CAGGCGTCCT ATCTTGAACG GCGCGCAAGG CGGCCAGTCA TGTCCTCGTT TCACGCCATG
TTCAGCGCTG GCACGCTGAT CGGCGCACTG ACCTATGCGG CGCTGGCGCA TCGCGGCGTC
GGGAACGGTT CGATCCTGTC GCTGTCGGGC AGCGTGATCG TGGTGATCGC GGTTGCCGCG
TTCACCCGCA CGACTGTTGC CGTGGCAGAG CCGGCGAACG ATGCCACGAC CGCCAGAAGC
CGTGCCAGGC CAGGAATTGC GGTGCTGGTG CTGGGTACGC TGGCCTTCGT GATTTTCCTG
GCCGAAGGCG CGATCATGGA TTGGGCTGCC GTCTATCTGG TGCGGGTCAT CGGCACATCG
GAAAGCATCG GTGCGGCCGG ATATGCGATC TTTGCGGGCA TGATGCTGTT GGGCCGGCTG
CTGGGGGACC GGGCCAACCG CGCTTTAGGC CCATCGCGAT TGTTTCGGAT CTCGGTCGCC
GCGGTGGCGC TATCCATGGC GGCGTTCTTG CTTTCTGGTT CGGTCTATCT GGCCTTTGCG
GCGCTTGCCT GCAGCGGACT GGCGATGGCG AATGTCATCC CGCTGATCTT CTCGGCCGCG
GGTATGCTTG GCGCGAGGGA CGGTGGGCGT TCGCTGTCTC GGGTGATTTC GATGGGTTAT
GCCGGAATCC TGTTGGGTCC GGCACTGATT GGTTTCCTGG CCCAGGCGGT TTCCCTGACG
GCGAGCCTTT CACTGGTTCT GGTGGGTCTC GCGGCGGTGG CATTCTTCGG CCGGCATTTC
AAGGAGGGGA TATTGTCCTA G
 
Protein sequence
MAGTDFPQRE RITLLACFLA GGLGIGSWGA NLPALGRRAG LDEGALGLVL LSFAAGAILA 
MTKAPPVIAR IGAERLSVIA AGLFGLGIIG IGWVTQMAAA VILASLAGLV FGALDVAMNS
QASYLERRAR RPVMSSFHAM FSAGTLIGAL TYAALAHRGV GNGSILSLSG SVIVVIAVAA
FTRTTVAVAE PANDATTARS RARPGIAVLV LGTLAFVIFL AEGAIMDWAA VYLVRVIGTS
ESIGAAGYAI FAGMMLLGRL LGDRANRALG PSRLFRISVA AVALSMAAFL LSGSVYLAFA
ALACSGLAMA NVIPLIFSAA GMLGARDGGR SLSRVISMGY AGILLGPALI GFLAQAVSLT
ASLSLVLVGL AAVAFFGRHF KEGILS