Gene Pden_1086 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_1086 
Symbol 
ID4578782 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp1058907 
End bp1060412 
Gene Length1506 bp 
Protein Length501 aa 
Translation table11 
GC content64% 
IMG OID639768405 
Productglucose-methanol-choline oxidoreductase 
Protein accessionYP_914890 
Protein GI119383834 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACGG ACAGCGATGT CGTCATCATC GGTTCGGGCA TCGGGGGCGC CACGCTCGCC 
TCGGAGCTGG CTCCTTCGGG TGCGCGGATC CTGATCCTGG AACGCGGCGA GCATCTGGCC
GACACGCCCG AGGCGCGCGA CGATATGGCG ATCTTCGAGC GGGGCTTCTA TCGCTCGGAC
GAGGAATGGA TCGGCTCCGA CGGCAAGAAA TTCCTGCCGG GGAACTATTA CTACGTCGGC
GGCAACTCGA AATTCTACGG CGCGGTGATG TATCGCTACC GCGTCGAGGA TTTCAGGGCA
CGCCCGCATC TGCAGGGCAC CTCGCCCGGC TGGGATATGT CCTATGACGA CATGGAGCCG
TGGTATGCCC GGGCGGAGGC GCTGTTCAAG GTGCGCGGCG CGACCGGGCA GGACCTGACC
GAGCCTCCCC GGTCGGGTCC GTTTCCTTTT CCGCCGGTCC CGGACGAGCC GGCGCTGCAG
CTGGTACGCG AGCGGCTGAA GCGGGCGGGC GTCCATCCCG CAAGCCTGCC GCTGGCCATC
GACATCGATG CCTGGCTGAA GCGTGGTCGG ACGGGTTGGG ACGCTTTCCC CAACACCGGC
GGCGCCGGCA AGATCGATGC CGAGGCCGGA CCGCTGGCCG ATGCGCTGAA GCATCCCAAC
GTTCGGCTGA TGACCGGCGC GCAGGTGATG CGGTTGGAAA CCGGTGCGGA CGGGCACGAG
GTGGTCGCGG CGGTCCTTCG CCGCAACGGG CGCGAAGAGC GCCTGACCGC GCGGCATTTC
GCCGTGGCGG CGGGGGCGGT GCAATCGGCG GCGCTGCTGC TGCGCTCGGC CAACGCAGCG
CATCCGACCG GCTTGGGCAA CCGCTCGGAC CAGCTTGGCC GGAACTTCAT GAACCACAAC
ACCAGCGCGA TGATCACGCT GAACCCGTTT CTGCGGAATG ACTCGGTCTA TCAGAAAACG
CTGTTCTTCA ACGATTTCTA CAACGACGAT CCCCAGGTTC ATGCGCCGCT TGGCAATGTG
CAGCTTTTGG GACGGATCAC AGGCAACATC CTCAAGGCGC AGGTGCCGGC CATGCCGCGT
TTCCTGGCAA GGCTGATGGC CGACCGCGCC TTCGGCTGGT TTCTGACCAG CGAGGACCTG
CCCAATCCGA ACAGTCGTGT TCTGGTTCGG GGCGAGAATA TCGTCATGGA CTGGCAGCGC
TCCAACATGG ATGCGCATCA CCTGTTGATC AAGCGCGCCA GGCAGGTGAT GAAACGCGCG
GGATTCCCGG TGGTGATGGT GCGGATATTC GGCAACAAGA CCACCTCGCA TCAATGCGGC
ACCGCGCGCC TCGGTGTCGA TCCGCACAAG TCGGTTGTCG ATCTGGACTG CCGGAGCCAT
GACATTCCCA ATCTATGGAT CACCGACGCC TCGATCCTTC CCACTTCGGC CGCGGTAAAC
CCGGCCCTGA CGATCGCCGC GCTAGCCCTC AAGGCAGGCG AGGCGATGAA GAATGAGTTA
ATCTGA
 
Protein sequence
MSTDSDVVII GSGIGGATLA SELAPSGARI LILERGEHLA DTPEARDDMA IFERGFYRSD 
EEWIGSDGKK FLPGNYYYVG GNSKFYGAVM YRYRVEDFRA RPHLQGTSPG WDMSYDDMEP
WYARAEALFK VRGATGQDLT EPPRSGPFPF PPVPDEPALQ LVRERLKRAG VHPASLPLAI
DIDAWLKRGR TGWDAFPNTG GAGKIDAEAG PLADALKHPN VRLMTGAQVM RLETGADGHE
VVAAVLRRNG REERLTARHF AVAAGAVQSA ALLLRSANAA HPTGLGNRSD QLGRNFMNHN
TSAMITLNPF LRNDSVYQKT LFFNDFYNDD PQVHAPLGNV QLLGRITGNI LKAQVPAMPR
FLARLMADRA FGWFLTSEDL PNPNSRVLVR GENIVMDWQR SNMDAHHLLI KRARQVMKRA
GFPVVMVRIF GNKTTSHQCG TARLGVDPHK SVVDLDCRSH DIPNLWITDA SILPTSAAVN
PALTIAALAL KAGEAMKNEL I