Gene Pden_1077 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_1077 
Symbol 
ID4580276 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp1051385 
End bp1052533 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content69% 
IMG OID639768397 
ProductABC transporter related 
Protein accessionYP_914882 
Protein GI119383826 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGGTT TGCGGCTGTC GAACATCGGC AAGAGCTATG GCGAGACCAG AGTCCTGTCG 
GGTATCGACC TCGACATCGC GGTGGGCGAA TTCGTGGCCG TGCTTGGCCC CTCGGGCTGC
GGCAAGACCA CGCTGCTGCG GCTGGTTGCA GGCTTTGACC GTCCCGATGA AGGCACGATC
ACCCTGGGCG ACCGGCAGGT GGCGGGTGGA AATGTCATGG TGCCGCCCGA AGGGCGCGGC
ATCGGCATCG TGTTCCAGAA CTACGCGCTG TGGCCGCATA TGTCGGTGGC GGAAAATGTC
GGCTATGCGC TGAAGGTGGC GCGCCTGCCC CGGGCCGAAC GCGAGGCCAG GGTGGCCCGG
GCGCTGGACA CCGTCAACCT GGCGCCCTTT GCCGGCCGTC GCCCGGCTGA TCTGTCGGGC
GGGCAACGCC AGCGGGTCGC GCTGGCCCGC TGCCTGGCCG CCGGTTCGGA TCTGGTGCTG
CTGGATGAGC CGCTGGCCAA CCTGGATGTG CATCTGCGCG CCACGATGGA AGACGAGTTC
CACCGCTTCC ACCGCGAAAG CGGGGCGACG CTGGTCTATA TCACCCATGA CCAATCCGAG
GCGATGGCCC TGGCCGACCG CATCGCGGTG ATGGACAAGG GCCGCCTGCT GCAATGCGCC
AGCCCCCGGC AACTATATCG CGAACCTGCC GACGCCACGG TGGCCGGTTT CATAGGGGGC
GGGCTGGTGC TGCCGGTCGA GGGCCTGCGC CCCATGGGGA ACGGGCTTGC CATGGCCGAT
CTTCTGGGAA CGCGCGTCCG GCTGCGCTGC CATGCCGGGG AAACCGCCCG GCCATTGGCC
ATGGCCTCGA CCCATCCCGC CGATATCCAG CCCGTCCATC CGGGCGAGGC CGGCATCCCC
GCCCGTGTCA CCGCCCGCAC CTATCGCGGC GGCAGCTGGT CCTATGAGCT GCGCCCCGAG
ACGGATCCGT CCCTCCGGCT GCCCATGGTG CTGCCCGACA CGGCCACGCC GCCCGAACCG
GGCGCGCGCC TTGACCTGGC GTTCCGCGAC CTCTGGGCCA TCCCGCTTTC CGGCACCTCC
GCTCCCGGCG CGGCGCCGAT CCCTTCCTCC TCCTCTTCGC ATCTTACGGA GCAATTCCAA
TGCGCCTGA
 
Protein sequence
MTGLRLSNIG KSYGETRVLS GIDLDIAVGE FVAVLGPSGC GKTTLLRLVA GFDRPDEGTI 
TLGDRQVAGG NVMVPPEGRG IGIVFQNYAL WPHMSVAENV GYALKVARLP RAEREARVAR
ALDTVNLAPF AGRRPADLSG GQRQRVALAR CLAAGSDLVL LDEPLANLDV HLRATMEDEF
HRFHRESGAT LVYITHDQSE AMALADRIAV MDKGRLLQCA SPRQLYREPA DATVAGFIGG
GLVLPVEGLR PMGNGLAMAD LLGTRVRLRC HAGETARPLA MASTHPADIQ PVHPGEAGIP
ARVTARTYRG GSWSYELRPE TDPSLRLPMV LPDTATPPEP GARLDLAFRD LWAIPLSGTS
APGAAPIPSS SSSHLTEQFQ CA