| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1065 |
|---|
| Symbol | |
|---|
| ID | 4580264 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 1042377 |
|---|
| End bp | 1043132 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639768385 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_914870 |
|---|
| Protein GI | 119383814 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGA TCGCTTTGAT CACCGGCGCC AACCGTGGGC TGGGCCGCAA TACCGCGCTT
TCCATCGCCC GCCACGGCGG TGATGTCGTC GTGGCCTATC GCGGCAACGC AGCGCAAGCC
GCCGAGGTCG TCACGGAAAT CGAGGCTTTG GGCCGCAAGG CGGTGGCGCT GCAACTGGAT
GTCTCGCGAG TGGCAGACTT CCCCGCCTTT GCCGACGCTC TGCGCGACAG CTTGCGGAAT
GCCTGGGGCC GCGACAGCTT CGACCACCTG GTCAACAACG CCGGTCATGG CGAATTCGCC
CCGATCGGCG AGACGACCGA GGCACAGTTC GACGGGTTGT TCGACGTGCA TGTGAAGGGC
GTGTTCTTCC TGACCCAGGC GCTGTTGCCG CTGATCGTCG ATGGCGGGCG GATCGTGAAC
TTCTCGACCG GGCTGACGCG GTTTTCCCAT GCCGGCTTTG CGGCCTATGC GGCGGCGAAG
GGCGCAGTCG AGGTGCTGAC CCGTTACATG GCGCAGGAGT TCGGGCCGCG CGGCATTGCG
GTGAACACGG TTGCGCCGGG TGCCATCGAG ACCGATTTCG GCGGCGGCAC CGTGCGCGAC
AACCCGGATG TAAACGCCAA GTTCGCCGGG CTGACCGCGC TTGGCCGGGT GGGCTTGCCC
GACGATATCG GCCCGATGGT GGCAAGCCTC TTGTCCGACG ACAACCGCTG GGTCACAGCG
CAACGGATCG AGGTCTCGGG CGGCCAGGCG ATCTGA
|
|---|
| Protein sequence | MSKIALITGA NRGLGRNTAL SIARHGGDVV VAYRGNAAQA AEVVTEIEAL GRKAVALQLD
VSRVADFPAF ADALRDSLRN AWGRDSFDHL VNNAGHGEFA PIGETTEAQF DGLFDVHVKG
VFFLTQALLP LIVDGGRIVN FSTGLTRFSH AGFAAYAAAK GAVEVLTRYM AQEFGPRGIA
VNTVAPGAIE TDFGGGTVRD NPDVNAKFAG LTALGRVGLP DDIGPMVASL LSDDNRWVTA
QRIEVSGGQA I
|
|---|
| |