| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0749 |
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| Symbol | |
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| ID | 4580047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 732340 |
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| End bp | 736548 |
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| Gene Length | 4209 bp |
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| Protein Length | 1402 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639768068 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_914557 |
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| Protein GI | 119383501 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0676703 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCAGG AACTTGCCAC CAATCCCCTG AACCCGCTGG CTGCGCCGCG GCAGTTCGAC
GAAATCAAGA TCTCGCTGGC CTCGCCCGAG GAAATCCTCG CCTGGTCCTA TGGCGAGGTG
AAGAAGCCCG AAACCATCAA CTACCGCACG TTCAAGCCCG AGCGTGACGG CCTGTTCTGC
GCGCGCATCT TTGGCCCGAT CAAGGATTAC GAATGCCTTT GCGGCAAATA CAAGCGCATG
AAGTATCGCG GCCTGGTCTG CGAGAAATGC GGCGTCGAGG TGACGCTGCA AAAGGTCCGG
CGCGAGCGCA TGGGCCATAT CGAGCTGGCC GCCCCGGTCG CGCATATCTG GTTCCTGAAG
TCGCTGCCGA GCCGCATCGG CCTGATGCTG GACATGACGC TGCGCGATCT TGAGCGCATC
CTCTATTTCG AAAACTACGT CGTCATCGAG CCGGGCCTGA CGGACCTTTC CTATGGCCAA
CTGCTGACCG AGGAGGAGTT CCTCGACGCG CAGGACCAGT ATGGCGCCGA CGCCTTCACC
GCCAATATCG GCGCCGAGGC GATCCGCGAG ATGCTGGCCA ATATCGACCT GGCCGCCACC
GCCGAGCAGC TGCGCGAGGA GCTGAAGGAG GCGACCGGCG AATTGAAGCC GAAAAAGATC
ATCAAGCGGC TGAAGATCGT CGAAAGCTTC CTGGAATCGG GTAACCGTCC CGAATGGATG
GTGCTGACCG TGATCCCGGT CATCCCGCCG GAACTGCGTC CGCTGGTGCC GCTGGACGGC
GGCCGCTTCG CGACCTCGGA CCTGAACGAC CTCTATCGCC GGGTCATCAA CCGCAACAAC
CGCCTCAAGC GCCTGATCGA GCTGCGCGCA CCCGACATCA TCGTGCGCAA CGAAAAGCGG
ATGCTGCAGG AATCGGTCGA TGCGCTGTTC GACAACGGCC GCCGCGGCCG CGTGATCACG
GGCAACAACA AGCGCCCGCT GAAATCGCTG TCCGACATGC TGAAGGGCAA GCAGGGCCGC
TTCCGCCAGA ACCTGCTGGG CAAGCGGGTG GACTTCTCGG GCCGCTCGGT CATCGTGACC
GGGCCGGAGC TGAAGCTGCA CCAGTGCGGC CTGCCCAAGA AGATGGCGCT GGAGCTGTTC
AAGCCGTTCA TCTATTCGCG GCTTGAAGCG AAGGGTCTGT CCTCGACCGT CAAGCAGGCC
AAGAAGCTGG TCGAGAAGGA ACGCCCCGAA GTCTGGGACA TCCTGGACGA GGTGATCCGC
GAGCATCCGG TGCTGCTGAA CCGTGCGCCG ACGCTGCACC GGCTGGGCAT CCAGGCCTTC
GAGCCCATCC TGATCGAAGG CAAGGCGATC CAGCTGCACC CGCTGGTCTG CTCGGCCTTC
AACGCCGACT TCGACGGCGA CCAGATGGCC GTGCACGTCC CGCTGTCGCT TGAGGCGCAG
TTGGAAGCGC GCGTGCTGAT GATGTCCACC AACAACGTGC TGTCGCCCGC CAACGGCGCG
CCGATCATCG TGCCGTCGCA GGACATGGTC CTTGGTCTCT ACTACACGAC CATGGAGCGC
GAGGGCATGA AGGGCGAGGG CATGGCCTTC ACCAGCCTTG AGGAAGTGGA ACACGCGCTG
GCCTCCGGCG CGGTGCATCT GCATGCCCGC ATCACCGCCC GCCTGCCGCA GATCGACGAG
AACGGCAACG AGGTCATCAC CCGTTTCGAA ACCACGCCCG GCCGCCTGCG CCTGGGCGCG
CTGCTGCCCA AGAACGCGAA AGCGCCTTTC GAGCTGGTGA ACCGCCTGCT GCGCAAGAAG
GACATCCAGA ACGTCATCGA CACCGTCTAT CGCTACTGCG GCCAGAAGGA ATCGGTGATC
TTCTGCGACC AGATCATGGG CCTCGGCTTC CGCGAGGCGT TCCGCGCCGG CATCTCCTTC
GGCAAGGACG ACATGGTCGT GCCGCCGACG AAATGGGATC TGGTCGAGGA AACCCAGGAT
CAGGTCAAGC AGTTCGAGCA GCAATACCTG GACGGCCTGA TCACCCAGGG CGAGAAATAC
AACAAGGTCG TCGATGCCTG GTCGAAATGT AACGACCGCG TCACCGACGC CATGATGAAG
ACCATCTCGG CCACCAAGAA GGACGAGAAG GGCGCCGAAC TGGAGCCGAA CTCGGTCTAC
ATGATGGCCC ATTCGGGCGC GCGGGGCTCG GTCAGCCAGA TGAAGCAGCT GGGCGGCATG
CGGGGCCTGA TGGCCAAGCC GAACGGCGAG ATCATCGAGA CGCCGATCAT CTCGAACTTC
AAGGAAGGCC TGACCGTTCT TGAATACTTC AACTCGACCC ACGGCGCGCG CAAGGGTCTG
TCGGATACCG CTCTGAAGAC GGCGAACTCG GGTTACCTGA CCCGCCGTCT GGTGGACGTG
GCTCAGGACT GCATCATCCG CGAGCATGAT TGCGGCACCG ATCACGCGAT CACCGCCTCG
GCGGCGGTCA ACGACGGCGA GGTGGTCAGC CCGCTTTCCG AGCGCGTGCT GGGCCGCGTC
GCCGCCGAGG ACGTGCTGGT CCCGGGCGAG GACGTGGTGA TCGTGCGCAA GAACGAGCTG
ATCGACGAGC GCAAGGCCGA CGAGATCGAG GCGGCGGGCG TGCAGAACGT GCGCATCCGC
TCGGCCCTGA CCTGCGAATC CGACGACGGG GTCTGCGCGC TTTGCTATGG CCGCGACCTG
GCCCGCGGCA CGCTGGTCAA TATCGGCGAG GCGGTCGGCA TCATCGCCGC CCAGTCCATC
GGCGAGCCGG GCACCCAGCT GACGATGCGG ACCTTCCACA TCGGCGGCAT CGCCCAGGGT
GGCCAGCAGT CCTTCATCGC CGCGGCGCAG GAGGGCACGG TGGCTTTCGA GAACGAAAGC
ACGCTGGAAA ACGCCAATGG CGAGCTGATC GTGATGAGCC GCAACATGCA GCTGCACATC
AAGTCGGCCA CCGGCGACAC GCTGGCCAGC CACAAGCTGT TCTACGGCTC GAAACTGTTC
GTGCGCGAGG GCGATGCCGT CGCCCGCGGG CAGAAGATGT TCGAATGGGA TCCCTACACC
CTGCCGATCA TCGCCGAGAA GGCCGGTGTG GCGAAATATG TCGATCTGAT CTCGGGGATC
TCGGTCCGCG ACGAGACCGA CGACGCGACC GGCATGACGC AGAAGATCGT GACGGACTGG
CGCTCGGCCC CCAAAGGCAA CGAGCTGAAG CCCGAGATCA TCATCGTCGA TCAGGATGGC
GAGCCGGTGC GCAACGAGCA GGGCAACCCG GTCACCTATC CGATGTCGGT CGAGGCGATC
CTGTCGGTCG AGGACGGGCA GGAAATCAAG GCCGGCGACG TGGTGGCGCG TATCCCGCGC
GAAGGCGCCA AGACCAAGGA CATCACCGGG GGTCTGCCCC GCGTGGCGGA ACTGTTCGAG
GCCCGTCGTC CCAAGGATCA CGCCATCATC GCCGAGATCG ACGGCTATGT GCGCTTTGGC
AAGGACTACA AGAACAAGCG CCGCATCGCC ATCGAGCCCG CCGACGACAC GCTGGAGCCG
GTCGAATACA TGGTGCCGAA AGGCAAGCAC ATCCCGGTGC AGGAAGGCGA CTTCGTGCAG
AAGGGCGACT ACATCATGGA CGGCAACCCG GCGCCGCATG ACATCCTGCG CATCATGGGT
ATCGAGGCTT TGGCCGATTA CCTGATCGAC GAGGTGCAGG ACGTCTACCG GCTGCAAGGC
GTGAAGATCA ACGACAAGCA CATCGAGGTG ATCGTGCGGC AGATGCTGCA GAAGATCGAG
ATCCTCGACA GCGGCGACAC CACGCTGCTG AAGGGCGAGC ATGTCGACCG TGACGAGTTC
GAGGAAGAGA ACGCCAAGAT CGAAGCCAAG GGCGGCCGTC AGGCCACGGG CGAGCCGGTG
CTGCTGGGCA TCACCAAGGC GTCGCTGCAA ACCCGCAGCT TCATCTCGGC CGCCTCGTTC
CAGGAGACGA CCCGCGTGCT GACCGAGGCC GCCGTCCAGG GCAAGCGCGA CAAGCTTGTC
GGGCTCAAGG AGAACGTCAT CGTCGGCCGG CTGATCCCGG CCGGCACCGG CGGGGCCACC
GCTCGCGTGC GCCGCATCGC GACCGACCGC GACCAGGAGG TGATCGAGGC GCGCCGCGCC
GAGGCGGAAG CTGCCGCCGC GCTGATCGCG CCGGAAGACA CCCCGGCCGA GGTCGGCGGC
GAGGACTGA
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| Protein sequence | MNQELATNPL NPLAAPRQFD EIKISLASPE EILAWSYGEV KKPETINYRT FKPERDGLFC
ARIFGPIKDY ECLCGKYKRM KYRGLVCEKC GVEVTLQKVR RERMGHIELA APVAHIWFLK
SLPSRIGLML DMTLRDLERI LYFENYVVIE PGLTDLSYGQ LLTEEEFLDA QDQYGADAFT
ANIGAEAIRE MLANIDLAAT AEQLREELKE ATGELKPKKI IKRLKIVESF LESGNRPEWM
VLTVIPVIPP ELRPLVPLDG GRFATSDLND LYRRVINRNN RLKRLIELRA PDIIVRNEKR
MLQESVDALF DNGRRGRVIT GNNKRPLKSL SDMLKGKQGR FRQNLLGKRV DFSGRSVIVT
GPELKLHQCG LPKKMALELF KPFIYSRLEA KGLSSTVKQA KKLVEKERPE VWDILDEVIR
EHPVLLNRAP TLHRLGIQAF EPILIEGKAI QLHPLVCSAF NADFDGDQMA VHVPLSLEAQ
LEARVLMMST NNVLSPANGA PIIVPSQDMV LGLYYTTMER EGMKGEGMAF TSLEEVEHAL
ASGAVHLHAR ITARLPQIDE NGNEVITRFE TTPGRLRLGA LLPKNAKAPF ELVNRLLRKK
DIQNVIDTVY RYCGQKESVI FCDQIMGLGF REAFRAGISF GKDDMVVPPT KWDLVEETQD
QVKQFEQQYL DGLITQGEKY NKVVDAWSKC NDRVTDAMMK TISATKKDEK GAELEPNSVY
MMAHSGARGS VSQMKQLGGM RGLMAKPNGE IIETPIISNF KEGLTVLEYF NSTHGARKGL
SDTALKTANS GYLTRRLVDV AQDCIIREHD CGTDHAITAS AAVNDGEVVS PLSERVLGRV
AAEDVLVPGE DVVIVRKNEL IDERKADEIE AAGVQNVRIR SALTCESDDG VCALCYGRDL
ARGTLVNIGE AVGIIAAQSI GEPGTQLTMR TFHIGGIAQG GQQSFIAAAQ EGTVAFENES
TLENANGELI VMSRNMQLHI KSATGDTLAS HKLFYGSKLF VREGDAVARG QKMFEWDPYT
LPIIAEKAGV AKYVDLISGI SVRDETDDAT GMTQKIVTDW RSAPKGNELK PEIIIVDQDG
EPVRNEQGNP VTYPMSVEAI LSVEDGQEIK AGDVVARIPR EGAKTKDITG GLPRVAELFE
ARRPKDHAII AEIDGYVRFG KDYKNKRRIA IEPADDTLEP VEYMVPKGKH IPVQEGDFVQ
KGDYIMDGNP APHDILRIMG IEALADYLID EVQDVYRLQG VKINDKHIEV IVRQMLQKIE
ILDSGDTTLL KGEHVDRDEF EEENAKIEAK GGRQATGEPV LLGITKASLQ TRSFISAASF
QETTRVLTEA AVQGKRDKLV GLKENVIVGR LIPAGTGGAT ARVRRIATDR DQEVIEARRA
EAEAAAALIA PEDTPAEVGG ED
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