Gene Pden_0711 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_0711 
Symbol 
ID4579520 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp692454 
End bp693995 
Gene Length1542 bp 
Protein Length513 aa 
Translation table11 
GC content70% 
IMG OID639768029 
Producthistidine ammonia-lyase 
Protein accessionYP_914519 
Protein GI119383463 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2986] Histidine ammonia-lyase 
TIGRFAM ID[TIGR01225] histidine ammonia-lyase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCTGAAC TGATCCTTAT CCCCGGTGAA ACCACGCTCG CGCAGCTCGA ACAGGTCTGG 
CGCCAGGGCC TTGCCGTGCG GCTGGCCGAC TCGGCCCGCC CCGGCATTGC CGAATCCGCC
GCGCGCATTG CCGCCGCCGC CAATGGCGAG GCGCCGGTCT ATGGCGTGAA TACCGGCTTT
GGCAAGCTGG CCTCGATCAA GATCGCGGCG CGGGACACCG CCACGCTGCA ACGCAACCTG
ATCCTGTCGC ATTGCTGCGG CGTGGGCGAG CCGGTCGAGC CGGAAACCGT GCGGTTGATC
ATGGTGCTGA AGCTTCTGTC GCTGGGCCGC GGTGCCTCGG GCGTGCGCCC CGAGGTGATC
CAGCTGATCG AGGACATGCT GGCCCGCGGC GTGCTGCCGG TGATCCCCTC GCAGGGTTCG
GTCGGTGCCT CGGGCGATCT GGCACCGCTG GCGCATATGG CCGCCGCCAT GCTGGGCGAG
GGGCGTGCGG TCCATGAAGG CCGCGAGATG TCCTCGGCCG AGGCGCTGGC GAGCGCCGGC
CTCAAGCCCG TGGTGCTGGC CGCCAAGGAG GGGCTGGCGC TGATCAACGG CACGCAGGTT
TCGACCGCCT TTGCGCTGGC GGGGCTGTTC GAGGCCTTCG CCTCGGCCCG CGCGGCGCTG
GTCACGTCGT CGCTTTCGAC CGATGCGATC ATGGGCTCGA CCGCGCCTTT CCTTGATGAG
ATCCACACCC TGCGCGGCCA TCGCGGCCAG ATCGTCGCGG CGCGGACGAT CCGCGCGCTG
ATGGACGGCT CGGAGATCCG CGAAAGCCAC CGCGAGGGCG ACAGCCGCGT GCAGGATCCG
TATTGCATCC GCTGCCAGCC GCAGGTGACG GGCGCCTGCA TCGACCTGCT CTGGCAGGCC
GCCCGCACGC TGGAGATCGA ATCGAACGCG GCGACCGACA ACCCGCTGGT GCTGGTCGGC
GCCGACCGCA TCGTCTCGGG CGGCAACTTC CATGCCGAGC CGGTGGCCTT TGCCGCCGAC
CAGATCGCGC TGGCCATCGC CGAGATCGGC GCCATTTCCC AGCGCCGCAT CGCGCTGATG
GTGGACCCTG CGCTGTCGCA TGATCTGCCG CCCTTCCTGA CCCCCGATCC GGGCCTGAAC
TCGGGGCTGA TGATCGCCGA AGTGACCTCG GCGGCGCTGA TGAGCGAGAA CAAGCACCTG
GCGACGCCTT GCAGCACCGA CTCGACGCCG ACCTCGGCGA ACCAGGAGGA CCACGTTTCC
ATGGCCGCCC ATGGCGCGCG GCGGCTGAAA CGCATGAACG CGAACCTCGC GCAGATCCTG
GGCATCGAGG CGCTTTGCGC CAGCGCCGGC GTCGAGTTCC GCGCGCCGCT GGCGACCTCG
GCGCCCTTGC AGGCGGTGAT CGCCGCGCTG CGCCAGACGG TGCCGGCGCT GGAGCAGGAC
CGCTATCTTG CCCCCGACCT GGCCGAATCC GCCCGGCTGG TGCGTGAGGG CGTGCTGGTC
GGCGCCATTC CCAGCCACCT GCTGGACGAG GTGCGGCCGT GA
 
Protein sequence
MSELILIPGE TTLAQLEQVW RQGLAVRLAD SARPGIAESA ARIAAAANGE APVYGVNTGF 
GKLASIKIAA RDTATLQRNL ILSHCCGVGE PVEPETVRLI MVLKLLSLGR GASGVRPEVI
QLIEDMLARG VLPVIPSQGS VGASGDLAPL AHMAAAMLGE GRAVHEGREM SSAEALASAG
LKPVVLAAKE GLALINGTQV STAFALAGLF EAFASARAAL VTSSLSTDAI MGSTAPFLDE
IHTLRGHRGQ IVAARTIRAL MDGSEIRESH REGDSRVQDP YCIRCQPQVT GACIDLLWQA
ARTLEIESNA ATDNPLVLVG ADRIVSGGNF HAEPVAFAAD QIALAIAEIG AISQRRIALM
VDPALSHDLP PFLTPDPGLN SGLMIAEVTS AALMSENKHL ATPCSTDSTP TSANQEDHVS
MAAHGARRLK RMNANLAQIL GIEALCASAG VEFRAPLATS APLQAVIAAL RQTVPALEQD
RYLAPDLAES ARLVREGVLV GAIPSHLLDE VRP