Gene Pden_0680 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_0680 
Symbol 
ID4578750 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp662953 
End bp663633 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content66% 
IMG OID639767998 
ProductGntR family transcriptional regulator 
Protein accessionYP_914488 
Protein GI119383432 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.231512 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.107075 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGCCC AGCCCGAAAG CCAGATTGTC GATGCGGTCC TGAACGCGAT TTCCGAGCAG 
CGCCTTCCCG CCGGGGCAAA GCTGGGCGAG CAGGCGCTGA GCGAGCTGTT CAATTGCAAC
CGTGCGAATG TCCGGCGCGC GCTGGCCTCT CTGGCTGCCA AGCAGGTCGT CGAGCTGCGT
CCCAATCGCG GCGCCTTCGT CGTCACCCCT TCGGCGCAGG AGGCGCGCGA GATATTCCAG
GCCCGCCGCG CGATCGAGCG GACCATTGCC CGTCAGGCCG TCGCCCGGGT GCGTGACGAG
GATGTCGCCT ATCTGCGCGC CAATATCGCC GCCGAGACCG AGGCGCGGGC GCGCCGGGAC
AAGCCGGCCG AGTTGCGGCT GTCGCAGCAG TTCCACATGT ATCTTGCGCG GCTTTCCGGC
AACCGCGTGC TGGAACGCTT CCTGGCCGAG CTGACCATGC GCAGCACCCT GATCCTGGGT
ATGTATCCCA GTGCGAAACA TGCTTGCTCG AACTGCGACG ACCATGTCGG AATCGTCGAT
GCCCTGATGG CCCGCGACGA GGAATTGCTG CTGCGCCTGA CCGATGAGCA CCTGCGCCAT
CTGGAGGCGG AGCTGAATTT CGATCTTCCG CCCGTGTCCT CGGTCAGCCT GAAGGACCAG
CTTCTCGGCT CGCCCGCATA A
 
Protein sequence
MDAQPESQIV DAVLNAISEQ RLPAGAKLGE QALSELFNCN RANVRRALAS LAAKQVVELR 
PNRGAFVVTP SAQEAREIFQ ARRAIERTIA RQAVARVRDE DVAYLRANIA AETEARARRD
KPAELRLSQQ FHMYLARLSG NRVLERFLAE LTMRSTLILG MYPSAKHACS NCDDHVGIVD
ALMARDEELL LRLTDEHLRH LEAELNFDLP PVSSVSLKDQ LLGSPA