Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_0664 |
Symbol | |
ID | 4578969 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | - |
Start bp | 644849 |
End bp | 645850 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639767982 |
Product | TRAP transporter solute receptor TAXI family protein |
Protein accession | YP_914472 |
Protein GI | 119383416 |
COG category | [R] General function prediction only |
COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.613063 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTCA GGACATTGTT CGCGGCCTTT GCCATCGCCG CCTCTTTCGG CCAGGCCGCG GCGGCGCAGG AGATGTCGTT CTTCCGCATC GGCACCGGCG GCACCGCCGG CACCTATTAC CCGATCGGCG GGCTGATCGC GAATGCGATC TCGAACCCGC CCGGCTCGCG GGCCTGCGAG GACGGCGGCT CTTGCGGCGT GCCGGGACTG GTGGCGACGG CCGTGGCCTC GAACGGCTCT GTCGGCAACG TGAACGCCAT CAACGGCGGC GCCATGGAGG CAGGCTTCAG CCAGTCCGAC GTGGCCTTTT GGGCACAGAC CGGCACCGGG CTGTGGGAAG GCCAGCCGGC GGTCGAGAAG CTGCGCCTGA TCGCCAACCT CTATCCGGAA AGCATCCACC TGGTGGCGCG CAAGGACGCG GGCATCGCCT CGGTCGCCGA TCTCAAGGGC AAGCGGGTCT CGCTGGACGA GCCGGGCTCG GGCACGCTGG TCGATGCCAA GATCATCCTC GAAGCCTTCG GCCTGTCCGA ATCCGACGTC ACGCCGGAAT ATCTCAAGCC CGACCAGGCG GCGGACCGGA TGCGCGACGG GGCGATGGAC GCCTTCTTCT TCGTCGGCGG CTATCCTGCG GGCGCCATCG CCGAGCTGTC CAGCCAGCAT GACGTGGTGC TGGTGCCGAT CACCGGCCCC GAGGTCGACA AGCTGCGCGA AACCTACAGC TTCTTCGCCA CCGACACCGT TCCCGCCGGA ACCTATGAAG GGCAGGATGC CGACGTCGCC ACGATCTCGG TCGGGGCGCA GCTGGTGACC AGCGCCGACC AGCCCGAGGA ACTGATCCAC GGCATCACCC AGGCGCTCTA CAACGAGAAC ACGCAAAAGC TGTTCGCCGC CGGCCATGCC AAGGGCAAGC TGATCACGCT GGAAAGCGCG ACCGAGGGCG CGGGCATCCC CTTCCATCCG GGCGCCGAGC GTTTCTACAA GGAAGCCGGC AAGCTCGAGT GA
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Protein sequence | MKLRTLFAAF AIAASFGQAA AAQEMSFFRI GTGGTAGTYY PIGGLIANAI SNPPGSRACE DGGSCGVPGL VATAVASNGS VGNVNAINGG AMEAGFSQSD VAFWAQTGTG LWEGQPAVEK LRLIANLYPE SIHLVARKDA GIASVADLKG KRVSLDEPGS GTLVDAKIIL EAFGLSESDV TPEYLKPDQA ADRMRDGAMD AFFFVGGYPA GAIAELSSQH DVVLVPITGP EVDKLRETYS FFATDTVPAG TYEGQDADVA TISVGAQLVT SADQPEELIH GITQALYNEN TQKLFAAGHA KGKLITLESA TEGAGIPFHP GAERFYKEAG KLE
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