| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0662 |
|---|
| Symbol | |
|---|
| ID | 4578967 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 641089 |
|---|
| End bp | 642597 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639767980 |
|---|
| Product | amino acid carrier protein |
|---|
| Protein accession | YP_914470 |
|---|
| Protein GI | 119383414 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1115] Na+/alanine symporter |
|---|
| TIGRFAM ID | [TIGR00835] amino acid carrier protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.166259 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAATTG CCCCGTCACC AAACGCAGGC TTGCCTTTCC AGGCAGGCGT CAACCATATC
CATCCCGCCC GAACCGGAGA ACCCAAGGTG ACGACAGTTA TCGGCTTTCT GAACACGATC
TTCTGGGGAT ATGTCCTGAT CTACGGCCTT CTTGCCGTCG GGGTCTATTT CACCATCCGG
CTGCGCTTCC AGCAGATCCT GCATTTCCGA GAGATGATCC GCTCGATCAC CGCCGCCCCT
GCGGCAGACC GACAAGGGAT TTCCCCGTTC CAGGCGCTTT GCACAAGCCT AGCGTCGCGG
GTGGGAACCG GCAACATTGC CGGGGTCGCG GTAGCGCTGG TCCTTGGCGG GCCGGGGGCG
ATCTTCTGGA TGTGGATGGT CGCCCTGGTC GGCATGGCGA CCGCCTATGC GGAATCGACG
CTGGCCCAGC TCTACAAGGT CAAGGACAGC CGCGAGCCCG ACGGCGTCTA TCGCGGCGGT
CCCGCCTTCT ACATCGCGCG CGGCCTTGGC CTGCCCTGGC TTGGCGGCGT GTTCTCGGTC
TGCCTGATCC TGTCCTTCGG GCTGGTGTTC AACGCGGTGC AGGCGAACTC GATCGCGGAT
GCGATGGAGG GGGCCTTCGG CATGCCCAAG CTGGCCACCG GGCTTGCCAT CGCCGCGCTG
ACCGGCGTGG TGATCTTCGG CGGCATCCGG CAGATCGCCA CCGTGGCGGA ATATGTCGTG
CCCTTCATGG CCGGCATCTA TCTGCTGGTC GCGATCATCG TCGTGCTGAT GAACCTGGGC
GCGGTTCCGG GGATGCTCGG CCATATCGTG TCCAACGCCT TCGGCCTGAC CGAGGCGGCC
GGCGGCATCA CGGGCGGCAT CGCCGCCGCC ATGCTGAACG GGGTGAAGCG CGGGCTGTTC
TCGAACGAGG CCGGGATGGG CTCGGCGCCG AACATCGCGG CGGCGGCGAC GCCCAACCCG
CACCATCCCT CGAGCCAGGG CTTCGTGCAG GCTTTCGGCG TCTTCATCGA CACCATCCTG
ATCTGCACCT GCACCGCGCT GATGATCCTG CTCTCGGGCG TCTATGTGCC GGGAGGCGAG
CTGACCGGCA CGCAACTGAC CCAATCCGCC CTGGCGGACC ATATCGGAAC CGCCGGCCCG
TTGTTTGTCG CGGTGGCGAT CTTCTTCTTC GCCTTCACCT CGATCATCGG CAATTACGCC
TATTCGGAAA TGGCGATGAC CTTTCTTGGC ATCGGCAACA AGGCCGGGCT TACCGCCCTG
CGGTGCCTGG TGCTGGTCAT GGTGCTGTGG GGGGCGTTGC AGGCCGTCAC GACGGTGTTC
GATCTTGCCG ATGCCTCGAT GGGGCTGATG GCGACGATCA ACCTGATCGC CATCGTCGCC
CTGTCGGGAA CGGTGGTGGC GCTGACGCGG AACTATTTCG CGCAGCGCGA GGAAGGACGC
ATCCCGAGGT TCAGCATTCG CGAGCATCCC GAAATGGCAA AGGGCGTCGA TAGCGATATC
TGGTCCTGA
|
|---|
| Protein sequence | MGIAPSPNAG LPFQAGVNHI HPARTGEPKV TTVIGFLNTI FWGYVLIYGL LAVGVYFTIR
LRFQQILHFR EMIRSITAAP AADRQGISPF QALCTSLASR VGTGNIAGVA VALVLGGPGA
IFWMWMVALV GMATAYAEST LAQLYKVKDS REPDGVYRGG PAFYIARGLG LPWLGGVFSV
CLILSFGLVF NAVQANSIAD AMEGAFGMPK LATGLAIAAL TGVVIFGGIR QIATVAEYVV
PFMAGIYLLV AIIVVLMNLG AVPGMLGHIV SNAFGLTEAA GGITGGIAAA MLNGVKRGLF
SNEAGMGSAP NIAAAATPNP HHPSSQGFVQ AFGVFIDTIL ICTCTALMIL LSGVYVPGGE
LTGTQLTQSA LADHIGTAGP LFVAVAIFFF AFTSIIGNYA YSEMAMTFLG IGNKAGLTAL
RCLVLVMVLW GALQAVTTVF DLADASMGLM ATINLIAIVA LSGTVVALTR NYFAQREEGR
IPRFSIREHP EMAKGVDSDI WS
|
|---|
| |