| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0659 |
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| Symbol | |
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| ID | 4578964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 635875 |
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| End bp | 638430 |
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| Gene Length | 2556 bp |
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| Protein Length | 851 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639767977 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_914467 |
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| Protein GI | 119383411 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.579537 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGTCG TCGTCGTTGA GTCCCCGGCC AAGGCCAAAA CGATCAACAA ATACCTGGGC
GACGACTATA CGGTTCTGGC CTCGTTCGGG CATGTGCGCG ACCTGCCGCC CAAGGATGGC
AGCGTCGATC CCGAGGCGGA TTTCGCCATG AAATGGGAAG TCGCCTCGGA ATCGAAAAAG
CACGTCAAGG CGATCCGGGA CGCGCTGGCC GCGGATCCGA ACCTGATCCT GGCCACCGAC
CCCGACCGCG AGGGCGAGGC GATTTCCTGG CACCTGCTGG AAACCCTGGC GCCGGCGCTG
AAGAAGGGCG CCGAGGTCAG CCGCGTCACC TTCAACGCCA TCACCAAGGC GGCGGTGACC
GAGGCGATGG CCAATCCGCG CCAGATCGAC CAGCCGCTGG TCGATGCCTA TCTGGCCCGC
CGGGCGCTGG ACTATCTGGT CGGCTTCAAC CTGTCGCCGG TCTTGTGGCG CAAGCTGCCC
GGCGCCAAGT CTGCCGGCCG GGTGCAATCG GTCGCCCTGC GCGTAATCGT CGATCGCGAG
ATGGAGATCG AGGCCTTCAA GGCCCGCGAA TACTGGTCGG TCCATGCCCG GCTGGCGACA
CCGCGCGGCG ACGAATACGA CGCAACCATG ACCGTCTTCG GTGGCAAGAA GCTGGAACGC
TTCGACATTG CCAGCGAGGA GCAGGCAAAG CTGGCCGTGG CCGCGATCAC CTCGCGCGAC
CTCAGGGTCG CCAGCGTTGC TGCCAAGCCC GCGAGCCGCA ATCCCTGGCC GCCCTTCATG
ACCTCGACCT TGCAGCAAGA GGCCAGCCGC AAGCTGGGCC TGGGCGCGCG GGCCTGCATG
TCGGCGGCGC AGCGGCTCTA CGAGGCGGGC CATATCACCT ATATGCGGAC CGACGGCATC
GACATGGCGC CCGAGGCGGT GATGGCGGCA CGCGACGCGA TCAAGGCGCG CTTCGGGGCG
GAATACCTGC CGAAATCGCC GCGCATGTAC AAGAACAAGG CCAAGAACGC GCAAGAGGCG
CATGAATGCA TTCGGCCGAC CGACATGATG CTGTCGCCCG ACCGGCTGCC GGTTTCGGAC
AAGGATCAGA AGGCGCTCTA CGACCTGATC TGGAAGCGCA CCATCGCCAG CCAGATGGAA
TCGGCGCGGA TGGAGCGCAC CACGGTCGAG ATCGGCTCGG CGGACGGGCA GGTGGGCCTG
CGCGCCAACG GGCAGGTGAT GCTGTTCGAC GGGTTCCTGC GGGTCTACGA CCAGGGTCGA
GACGACGAGG AGGACGAGGA CAGCCGCCGC CTGCCCTCGA TCGAGGAGGG CGAGCGTGCC
GAGAAGCGCT CCGTCACGCC CGAGCAGCAT TTCACCCAGG CCCCGCCGCG CTATACCGAG
GCGACGCTGG TCAAGCGCAT GGAAGAACTG GGGATCGGCC GGCCCTCGAC CTATGCCAGC
ATCGTGACCA CCATTCAGGA CCGCGACTAT GTCCGCAAGG AGCAGAACCG CCTGATCCCC
GAGGACAAGG GCCGGCTGGT CACCATCTTC CTGCTGAAAT ATTTCCCGCG CTATGTCAGC
TACGATTTCA CCGCCAACCT GGAGGGGGAG CTCGACGACA TCTCCTCGGG CGAGCGTGCC
TATCGCGAAG TGCTGCGCCG CTTCTGGCGG GACTTCACCG CCGCGCTGGA GGGCACGTCC
GAGTTGCGCA TCACCGAGGT GCTCGACGCT ATCGACGAGG CGCTGGCGCC GCATCTCTAC
CCTCCGCGGG CCGATGGCTC GGACCCGCGC GAATGCCCAC TTTGCCACAA GGGGCGGCTG
CACCTGAAGA CGGCGCGCTC GGGCGGGGCC TTCATCGGCT GCTCGAACTA TCCCGATTGC
CGCTTTACCC GGCCGATCAG CTCGCCCGAT GCCGAAGTGG TGGGCGATGC CGTGCTGGGC
GTGGACAATG GCGATGAGAT CAGCCTGAAG AACGGCCGCT TCGGACCCTA TGTGCAGCGC
GGCGAGGCCA CGGCGGAGAA TCCGAAGCCA CCGCGCGCCT CGATCCCCAA GGGCTGGGAC
CTGGCCTCGG TCGATCTGGA GCGGGCGCTG GCGCTCTTGT CGCTGCCGCG CGAGATCGGC
TCGCATCCCG AGGACGGCGT TCCGGTCGAG GCCGGCATCG GCCGCTACGG CCCCTATGTG
AAGCATGGCG CGAAATACGC CAACCTGCCG GATGTGGACG AGGTCTTTAC CATCGGCATG
AACCGCGCGG TCGAGGTTCT GGCCTCGAAA CAGGTGCGGG GCAGGGCTGC GGTGGCCGCG
CCGCTGGCGG AACTGGGCGA GCATCCCGAA GGCGGTTCGG TGCAGGTGAT GAGCGGCCGC
TATGGCCCTT ACGTCAAATG GGGCAAGGTC AATGCGACGC TGCCCCGTGA CCTGGAGCCC
GGCGCAGTCA CGCTTGAGCG TGCGCTGGAG TTGATCGCCG AGAAAGCCGC GAAATCGGGC
AAGAAGCCGG CGAAGAAGGC TGCCGCGAAG AAACCGGCCG CAAAGAAACC CGCTGCGAAG
AAGCCGGCTG CGGCCAAGGC GAAGAAGGCC GGGTAG
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| Protein sequence | MPVVVVESPA KAKTINKYLG DDYTVLASFG HVRDLPPKDG SVDPEADFAM KWEVASESKK
HVKAIRDALA ADPNLILATD PDREGEAISW HLLETLAPAL KKGAEVSRVT FNAITKAAVT
EAMANPRQID QPLVDAYLAR RALDYLVGFN LSPVLWRKLP GAKSAGRVQS VALRVIVDRE
MEIEAFKARE YWSVHARLAT PRGDEYDATM TVFGGKKLER FDIASEEQAK LAVAAITSRD
LRVASVAAKP ASRNPWPPFM TSTLQQEASR KLGLGARACM SAAQRLYEAG HITYMRTDGI
DMAPEAVMAA RDAIKARFGA EYLPKSPRMY KNKAKNAQEA HECIRPTDMM LSPDRLPVSD
KDQKALYDLI WKRTIASQME SARMERTTVE IGSADGQVGL RANGQVMLFD GFLRVYDQGR
DDEEDEDSRR LPSIEEGERA EKRSVTPEQH FTQAPPRYTE ATLVKRMEEL GIGRPSTYAS
IVTTIQDRDY VRKEQNRLIP EDKGRLVTIF LLKYFPRYVS YDFTANLEGE LDDISSGERA
YREVLRRFWR DFTAALEGTS ELRITEVLDA IDEALAPHLY PPRADGSDPR ECPLCHKGRL
HLKTARSGGA FIGCSNYPDC RFTRPISSPD AEVVGDAVLG VDNGDEISLK NGRFGPYVQR
GEATAENPKP PRASIPKGWD LASVDLERAL ALLSLPREIG SHPEDGVPVE AGIGRYGPYV
KHGAKYANLP DVDEVFTIGM NRAVEVLASK QVRGRAAVAA PLAELGEHPE GGSVQVMSGR
YGPYVKWGKV NATLPRDLEP GAVTLERALE LIAEKAAKSG KKPAKKAAAK KPAAKKPAAK
KPAAAKAKKA G
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