Gene Pden_0624 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_0624 
Symbol 
ID4579008 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp600267 
End bp600986 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content69% 
IMG OID639767942 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_914432 
Protein GI119383376 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.171124 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGAAAA TCAGACTGTT CATAGATCAC CCATTGGCCG AAGGACAAGG CATCGAGCTG 
AATGCCGACC AGTCGCATTA CCTTTCCTCG GTCATGCGGC AGGGTGCCGG GGACGAGATC
CTGGTCTTCA ACGGGCAGGA CGGCGAATGG CTGGCGCGGA TCGAGCGCAT CGCCAAGCGG
GGCGGCGCGC TGGAGGCGCT GCGGCAGACC GCGCCACAGT TGAACCCGCC CGACCTGTGG
CTGGTCTTTG CCCCGATCAA GAAGGCGCGC ACCGATTTCA TCGTGGAAAA GGCGGCCGAG
ATGGGCGCCG CCCGCATCCT GCCGGTGCAG ACCGACCACA CCAATTCCGA ACGCATCCGC
CAGGACCGCT TGCAGGCCCA TGCCGTCGAG GCGGCCGAGC AATGCGGCGG CACCCATGTC
CCCGAGGTCT GCGACCTGGT GCCGCTGTCG CGGCTGCTGG ACGGCTGGGA TGCCGGCCGG
CGCATCCTGT GGGCGGACGA GGCACTGGCG GGGCCGGCAC AGGTGCTGTC CGGCCTGCCG
CGCGGGCCTT GGGCAATTCT CATCGGCCCC GAGGGCGGCT GGTCCGAATC GGAGCGCAAG
CGCCTTTCGG CCATGGATTG CGTCACGCGC ATCGCCCTGG GGCCGCGAAT CCTGCGCGCC
GACACCGCTG CCGTGGCGTC ACTGGCGCTG TGGCAGGCCA GCCTGGGCGA CTGGCGCTGA
 
Protein sequence
MAKIRLFIDH PLAEGQGIEL NADQSHYLSS VMRQGAGDEI LVFNGQDGEW LARIERIAKR 
GGALEALRQT APQLNPPDLW LVFAPIKKAR TDFIVEKAAE MGAARILPVQ TDHTNSERIR
QDRLQAHAVE AAEQCGGTHV PEVCDLVPLS RLLDGWDAGR RILWADEALA GPAQVLSGLP
RGPWAILIGP EGGWSESERK RLSAMDCVTR IALGPRILRA DTAAVASLAL WQASLGDWR