Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_0624 |
Symbol | |
ID | 4579008 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | - |
Start bp | 600267 |
End bp | 600986 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639767942 |
Product | 16S ribosomal RNA methyltransferase RsmE |
Protein accession | YP_914432 |
Protein GI | 119383376 |
COG category | [S] Function unknown |
COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.171124 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAAAA TCAGACTGTT CATAGATCAC CCATTGGCCG AAGGACAAGG CATCGAGCTG AATGCCGACC AGTCGCATTA CCTTTCCTCG GTCATGCGGC AGGGTGCCGG GGACGAGATC CTGGTCTTCA ACGGGCAGGA CGGCGAATGG CTGGCGCGGA TCGAGCGCAT CGCCAAGCGG GGCGGCGCGC TGGAGGCGCT GCGGCAGACC GCGCCACAGT TGAACCCGCC CGACCTGTGG CTGGTCTTTG CCCCGATCAA GAAGGCGCGC ACCGATTTCA TCGTGGAAAA GGCGGCCGAG ATGGGCGCCG CCCGCATCCT GCCGGTGCAG ACCGACCACA CCAATTCCGA ACGCATCCGC CAGGACCGCT TGCAGGCCCA TGCCGTCGAG GCGGCCGAGC AATGCGGCGG CACCCATGTC CCCGAGGTCT GCGACCTGGT GCCGCTGTCG CGGCTGCTGG ACGGCTGGGA TGCCGGCCGG CGCATCCTGT GGGCGGACGA GGCACTGGCG GGGCCGGCAC AGGTGCTGTC CGGCCTGCCG CGCGGGCCTT GGGCAATTCT CATCGGCCCC GAGGGCGGCT GGTCCGAATC GGAGCGCAAG CGCCTTTCGG CCATGGATTG CGTCACGCGC ATCGCCCTGG GGCCGCGAAT CCTGCGCGCC GACACCGCTG CCGTGGCGTC ACTGGCGCTG TGGCAGGCCA GCCTGGGCGA CTGGCGCTGA
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Protein sequence | MAKIRLFIDH PLAEGQGIEL NADQSHYLSS VMRQGAGDEI LVFNGQDGEW LARIERIAKR GGALEALRQT APQLNPPDLW LVFAPIKKAR TDFIVEKAAE MGAARILPVQ TDHTNSERIR QDRLQAHAVE AAEQCGGTHV PEVCDLVPLS RLLDGWDAGR RILWADEALA GPAQVLSGLP RGPWAILIGP EGGWSESERK RLSAMDCVTR IALGPRILRA DTAAVASLAL WQASLGDWR
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