Gene Pden_0617 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_0617 
Symbol 
ID4579001 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp593194 
End bp593868 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content73% 
IMG OID639767935 
ProductHAD family hydrolase 
Protein accessionYP_914425 
Protein GI119383369 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.422175 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.344237 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGGAA CGGTGGTCTT CGATCTGGAC GGCACGCTGG CCGACACCTC GGGCGACCTG 
ATCGCGGCGG CGAATGCCTG CTTTCAGGCG CGCGGCCTGG GCCCGCTGCT GGACCCGGTC
GAGGATGCGC TGATCGCCTT TCACGGCGGG CGGGCCATGC TGCGGGCGGG CTATGGCCGC
CTGCCCGCCG ACCGGCTGCT GCCGCCCGGC GCCGAGGACG AGGACTATCC CCGCCTGCTG
GTGCATTACG GCAAGGCCAT AGCCGTGCAT ACGCGGCTTT ATCCCGGCAC CGAGGCCGCG
CTGGAGCAAC TGGCGGCAGC CGGTCACCGG CTTGCGGTCT GCACCAACAA GCCCGCCGCC
CTGGCCGAGA CATTGCTGCG CCAACTGGGC ATCCGCGACC GCTTCGCCGC GATGATCGGC
GCCGACACGC TGCCGGTGCG CAAGCCCGAT CCCCGCCCCT ATGCCGCCGC GGTCGAGGCA
GCGGGCGGGA CGGTGGCGCG ATCCTTCCTG GTCGGCGATA CCGAAACCGA CCGCAAGACC
GCAGCCGCCG CCGGTGTGCG GGTGGCGCTG GTCGCCTTCG GCCCCGAGGG AGAGGCGCTG
CGCCGCCTGG CGCCCGAGGC GATGCTGGCG CATTTCGACG ACTTGCCGGG CCTGGCCGCC
GACTGGCTGG CCTGA
 
Protein sequence
MAGTVVFDLD GTLADTSGDL IAAANACFQA RGLGPLLDPV EDALIAFHGG RAMLRAGYGR 
LPADRLLPPG AEDEDYPRLL VHYGKAIAVH TRLYPGTEAA LEQLAAAGHR LAVCTNKPAA
LAETLLRQLG IRDRFAAMIG ADTLPVRKPD PRPYAAAVEA AGGTVARSFL VGDTETDRKT
AAAAGVRVAL VAFGPEGEAL RRLAPEAMLA HFDDLPGLAA DWLA