Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_0598 |
Symbol | alaS |
ID | 4579642 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | + |
Start bp | 573749 |
End bp | 576406 |
Gene Length | 2658 bp |
Protein Length | 885 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639767916 |
Product | alanyl-tRNA synthetase |
Protein accession | YP_914406 |
Protein GI | 119383350 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0013] Alanyl-tRNA synthetase |
TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.188713 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCAGCT TGAACGATGT CCGCTCGACT TTCCTGAACT ATTTCGAACG CAACGGCCAC CGTGTCGTCG AGTCGAGCCC GCTTGTGCCG AGGAACGACC CGACCCTGAT GTTCACCAAT TCGGGCATGG TGCAGTTCAA GAACCTGTTC ACCGGGGTCG AAACGCGCGA CTACAAGCGC GCCACCACCG CGCAGAAATG CGTGCGCGCC GGCGGCAAGC ATAACGACCT CGACAATGTC GGCTATACCG CGCGCCACCA TACCTTCTTC GAGATGCTGG GGAATTTCAG CTTCGGCGAT TACTTCAAGG ACGGTGCCAT CCCCTTTGCC TGGGAGTTGC TGACCAAGGA TTTCGGCATC CCCAAGGACA AGCTGCTGGT CACCGTCTAT CATACCGATG ACGAAGCCGC CGATATCTGG AAGAAGGTCG CGGGGCTTTC CGACGACCGC ATCATCCGTA TCCCGACCAG CGACAATTTC TGGCAGATGG GCCCGACCGG CCCCTGCGGT CCATGCACCG AGATCTTCTA TGACCATGGC GAGCAGATCT GGGGTGGCCC GCCCGGCTCG GCCGATGAGG ACGGCGACCG CTTCATCGAG ATCTGGAACC TCGTCTTCAT GCAGAACGAG CAGTTCGAGG ACGGCACGAT GCGCGCGCTG GACATGCAGT CGATCGACAC CGGCATGGGG TTGGAACGGA TCGGTGCGCT CTTGCAAGGC AAGCACGACA ATTACGATAC CGACCTGATG CGTGGCCTGA TCGAGGCCAG CGCGCATGCG ACCAGCGCCG ACCCGGACGG TCCCGGCAAG GTGCATCACC GCGTCATCGC CGATCATCTG CGCTCGACCA GCTTCCTGAT CGCCGATGGG GTGATGCCCT CGAACGAGGG ACGCGGCTAT GTGCTGCGCC GCATCATGCG CCGCGCCATG CGCCACGCCC ATATGCTGGG CGCCAAGGAT CCGGTGATGC ACCGCCTGGT CCCGGCGCTG GTGCGCGAGA TGGGCGCGGC CTATCCCGAA CTCGGCCGCG CGCAGGCGTT GATCGAAGAG ACGCTGAAGC TGGAGGAGAC CCGCTTCAAG CAGACCCTGG ACCGTGGCCT GCGGCTGCTG GACGACGAAT TGGCGAAGCT GCCCGAAGGT GCGAACCTGC CGGGCGAGGC GGCCTTCAAG CTCTATGACA CCTATGGTTT CCCGCTGGAT CTGACCCAGG ACGCGCTGCG CGAAAAGGGT CGGGCGGTCG ATACGGCCGG TTTCGATTCG GCGATGGCGG AGCAGAAGGC CAAGGCCCGT GCCGCCTGGG CCGGCTCTGG CGAGACCAAG GATGCCGCGA TCTGGTTCGA CATCGCCGAA GAGCATGGCG CCACCGAATT CCTCGGCTAT GACACCGAGA TCAGCGAGGG CCAGGTCCTC GCATTGGTTC AGGACGGCGC TGCGGTCGAG GAAGCCGGCG AGGGGCAGCA GGTCCAGATC GTGGTGAACC AGACGCCGTT CTATGGCGAG GCCGGCGGCC AGGTCGGCGA TACTGGCCTG ATCAAGACGG AGACCGGCGC CGCCCGCGTG ACCGATACGA AAAAGACCGG CGGCGTCTTC ATCCATATCG CCGAGGTGAC GCTGGGCACG ATCCAGCGCG GCCAGGGTGC GCAGCTGTCC GTCGATCACG ACCGTCGCAG CGCGATCCGC GCCAACCATT CGGCCACGCA CCTGCTGCAC GAGGCGCTGC GCCGCGCCCT GGGCGAGCAT GTCGCGCAGC GCGGCAGCCT GAACGCACCC GACCGGCTGC GCTTCGACTT CAGCCATGCC AAGGCGATGA CGCCCGAGGA ACTGGCGCAG GTCGAGCGCG AGGTGAACGA TTTTATCCGC CAGAATAGTC CGGTCGAGAC CCGGATCATG ACCCCCGACG ATGCCCGTGC ATTGGGCGCG CAGGCGCTTT TCGGCGAGAA GTACGGTGAT GAGGTTCGGG TGGTCTCGAT GGGCGAACTG CCGGGCTCGG GCAAGGGCAC CGGCGGCCAG ACCTATTCGC TGGAGCTTTG CGGCGGCACC CATGTCGCGC GCACCGGCGA TATCGGCATG TTTGCCCTGA CTTCGGAAAC CGCATCGGCC GCCGGCATCC GCCGCATCGA GGCGCTGACC GGCCAGGCGG CGATGGACGA GTTGCGCCGC GTGGACGGCG AACTCAATGA GATTGCCGGC ATTGTCAAGG CGCAGGCGGG TGACGTGGTG AGCAAGGTCC GCGCGCTTGC CGATGAGCGC AAGGCGCTGG CGAACGAGGT CGCGCAGCTC AAGCGCCAGC TTGCCATGGG CGGCGGCTCC GAGGACAAGC CCCGTGAAAT CAACGGCATC AAGCTTATCG CCCGCCGCGT CGAGGGTGTG AGCGGCAAGG AACTCGGCCC GCTGGTCGAT GAGATGAAGT CGCGGCTCGG CTCGGGCGCC GTGGTGGTGC TGGCCGAGGC AGACGGCAAG GCGACGGTGG CGGCGGGCGT GACGCCCGAC CTGACCGGCC GGATCAGCGC CGTCGAACTG GTGCAGACCG CGACGGCGGC ACTGGGCGGC AAAGGCGGCG GTGGCCGGCC CGACCGCGCC CAGGGCGGGG CACCCAGCCT TGCTGCCGCC GACAGCGCCA TTTCCGCCGT CGAAACCCTG ATCGGAGAGA AAGCATGA
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Protein sequence | MPSLNDVRST FLNYFERNGH RVVESSPLVP RNDPTLMFTN SGMVQFKNLF TGVETRDYKR ATTAQKCVRA GGKHNDLDNV GYTARHHTFF EMLGNFSFGD YFKDGAIPFA WELLTKDFGI PKDKLLVTVY HTDDEAADIW KKVAGLSDDR IIRIPTSDNF WQMGPTGPCG PCTEIFYDHG EQIWGGPPGS ADEDGDRFIE IWNLVFMQNE QFEDGTMRAL DMQSIDTGMG LERIGALLQG KHDNYDTDLM RGLIEASAHA TSADPDGPGK VHHRVIADHL RSTSFLIADG VMPSNEGRGY VLRRIMRRAM RHAHMLGAKD PVMHRLVPAL VREMGAAYPE LGRAQALIEE TLKLEETRFK QTLDRGLRLL DDELAKLPEG ANLPGEAAFK LYDTYGFPLD LTQDALREKG RAVDTAGFDS AMAEQKAKAR AAWAGSGETK DAAIWFDIAE EHGATEFLGY DTEISEGQVL ALVQDGAAVE EAGEGQQVQI VVNQTPFYGE AGGQVGDTGL IKTETGAARV TDTKKTGGVF IHIAEVTLGT IQRGQGAQLS VDHDRRSAIR ANHSATHLLH EALRRALGEH VAQRGSLNAP DRLRFDFSHA KAMTPEELAQ VEREVNDFIR QNSPVETRIM TPDDARALGA QALFGEKYGD EVRVVSMGEL PGSGKGTGGQ TYSLELCGGT HVARTGDIGM FALTSETASA AGIRRIEALT GQAAMDELRR VDGELNEIAG IVKAQAGDVV SKVRALADER KALANEVAQL KRQLAMGGGS EDKPREINGI KLIARRVEGV SGKELGPLVD EMKSRLGSGA VVVLAEADGK ATVAAGVTPD LTGRISAVEL VQTATAALGG KGGGGRPDRA QGGAPSLAAA DSAISAVETL IGEKA
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