Gene Pden_0598 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_0598 
SymbolalaS 
ID4579642 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp573749 
End bp576406 
Gene Length2658 bp 
Protein Length885 aa 
Translation table11 
GC content66% 
IMG OID639767916 
Productalanyl-tRNA synthetase 
Protein accessionYP_914406 
Protein GI119383350 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0013] Alanyl-tRNA synthetase 
TIGRFAM ID[TIGR00344] alanine--tRNA ligase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.188713 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCAGCT TGAACGATGT CCGCTCGACT TTCCTGAACT ATTTCGAACG CAACGGCCAC 
CGTGTCGTCG AGTCGAGCCC GCTTGTGCCG AGGAACGACC CGACCCTGAT GTTCACCAAT
TCGGGCATGG TGCAGTTCAA GAACCTGTTC ACCGGGGTCG AAACGCGCGA CTACAAGCGC
GCCACCACCG CGCAGAAATG CGTGCGCGCC GGCGGCAAGC ATAACGACCT CGACAATGTC
GGCTATACCG CGCGCCACCA TACCTTCTTC GAGATGCTGG GGAATTTCAG CTTCGGCGAT
TACTTCAAGG ACGGTGCCAT CCCCTTTGCC TGGGAGTTGC TGACCAAGGA TTTCGGCATC
CCCAAGGACA AGCTGCTGGT CACCGTCTAT CATACCGATG ACGAAGCCGC CGATATCTGG
AAGAAGGTCG CGGGGCTTTC CGACGACCGC ATCATCCGTA TCCCGACCAG CGACAATTTC
TGGCAGATGG GCCCGACCGG CCCCTGCGGT CCATGCACCG AGATCTTCTA TGACCATGGC
GAGCAGATCT GGGGTGGCCC GCCCGGCTCG GCCGATGAGG ACGGCGACCG CTTCATCGAG
ATCTGGAACC TCGTCTTCAT GCAGAACGAG CAGTTCGAGG ACGGCACGAT GCGCGCGCTG
GACATGCAGT CGATCGACAC CGGCATGGGG TTGGAACGGA TCGGTGCGCT CTTGCAAGGC
AAGCACGACA ATTACGATAC CGACCTGATG CGTGGCCTGA TCGAGGCCAG CGCGCATGCG
ACCAGCGCCG ACCCGGACGG TCCCGGCAAG GTGCATCACC GCGTCATCGC CGATCATCTG
CGCTCGACCA GCTTCCTGAT CGCCGATGGG GTGATGCCCT CGAACGAGGG ACGCGGCTAT
GTGCTGCGCC GCATCATGCG CCGCGCCATG CGCCACGCCC ATATGCTGGG CGCCAAGGAT
CCGGTGATGC ACCGCCTGGT CCCGGCGCTG GTGCGCGAGA TGGGCGCGGC CTATCCCGAA
CTCGGCCGCG CGCAGGCGTT GATCGAAGAG ACGCTGAAGC TGGAGGAGAC CCGCTTCAAG
CAGACCCTGG ACCGTGGCCT GCGGCTGCTG GACGACGAAT TGGCGAAGCT GCCCGAAGGT
GCGAACCTGC CGGGCGAGGC GGCCTTCAAG CTCTATGACA CCTATGGTTT CCCGCTGGAT
CTGACCCAGG ACGCGCTGCG CGAAAAGGGT CGGGCGGTCG ATACGGCCGG TTTCGATTCG
GCGATGGCGG AGCAGAAGGC CAAGGCCCGT GCCGCCTGGG CCGGCTCTGG CGAGACCAAG
GATGCCGCGA TCTGGTTCGA CATCGCCGAA GAGCATGGCG CCACCGAATT CCTCGGCTAT
GACACCGAGA TCAGCGAGGG CCAGGTCCTC GCATTGGTTC AGGACGGCGC TGCGGTCGAG
GAAGCCGGCG AGGGGCAGCA GGTCCAGATC GTGGTGAACC AGACGCCGTT CTATGGCGAG
GCCGGCGGCC AGGTCGGCGA TACTGGCCTG ATCAAGACGG AGACCGGCGC CGCCCGCGTG
ACCGATACGA AAAAGACCGG CGGCGTCTTC ATCCATATCG CCGAGGTGAC GCTGGGCACG
ATCCAGCGCG GCCAGGGTGC GCAGCTGTCC GTCGATCACG ACCGTCGCAG CGCGATCCGC
GCCAACCATT CGGCCACGCA CCTGCTGCAC GAGGCGCTGC GCCGCGCCCT GGGCGAGCAT
GTCGCGCAGC GCGGCAGCCT GAACGCACCC GACCGGCTGC GCTTCGACTT CAGCCATGCC
AAGGCGATGA CGCCCGAGGA ACTGGCGCAG GTCGAGCGCG AGGTGAACGA TTTTATCCGC
CAGAATAGTC CGGTCGAGAC CCGGATCATG ACCCCCGACG ATGCCCGTGC ATTGGGCGCG
CAGGCGCTTT TCGGCGAGAA GTACGGTGAT GAGGTTCGGG TGGTCTCGAT GGGCGAACTG
CCGGGCTCGG GCAAGGGCAC CGGCGGCCAG ACCTATTCGC TGGAGCTTTG CGGCGGCACC
CATGTCGCGC GCACCGGCGA TATCGGCATG TTTGCCCTGA CTTCGGAAAC CGCATCGGCC
GCCGGCATCC GCCGCATCGA GGCGCTGACC GGCCAGGCGG CGATGGACGA GTTGCGCCGC
GTGGACGGCG AACTCAATGA GATTGCCGGC ATTGTCAAGG CGCAGGCGGG TGACGTGGTG
AGCAAGGTCC GCGCGCTTGC CGATGAGCGC AAGGCGCTGG CGAACGAGGT CGCGCAGCTC
AAGCGCCAGC TTGCCATGGG CGGCGGCTCC GAGGACAAGC CCCGTGAAAT CAACGGCATC
AAGCTTATCG CCCGCCGCGT CGAGGGTGTG AGCGGCAAGG AACTCGGCCC GCTGGTCGAT
GAGATGAAGT CGCGGCTCGG CTCGGGCGCC GTGGTGGTGC TGGCCGAGGC AGACGGCAAG
GCGACGGTGG CGGCGGGCGT GACGCCCGAC CTGACCGGCC GGATCAGCGC CGTCGAACTG
GTGCAGACCG CGACGGCGGC ACTGGGCGGC AAAGGCGGCG GTGGCCGGCC CGACCGCGCC
CAGGGCGGGG CACCCAGCCT TGCTGCCGCC GACAGCGCCA TTTCCGCCGT CGAAACCCTG
ATCGGAGAGA AAGCATGA
 
Protein sequence
MPSLNDVRST FLNYFERNGH RVVESSPLVP RNDPTLMFTN SGMVQFKNLF TGVETRDYKR 
ATTAQKCVRA GGKHNDLDNV GYTARHHTFF EMLGNFSFGD YFKDGAIPFA WELLTKDFGI
PKDKLLVTVY HTDDEAADIW KKVAGLSDDR IIRIPTSDNF WQMGPTGPCG PCTEIFYDHG
EQIWGGPPGS ADEDGDRFIE IWNLVFMQNE QFEDGTMRAL DMQSIDTGMG LERIGALLQG
KHDNYDTDLM RGLIEASAHA TSADPDGPGK VHHRVIADHL RSTSFLIADG VMPSNEGRGY
VLRRIMRRAM RHAHMLGAKD PVMHRLVPAL VREMGAAYPE LGRAQALIEE TLKLEETRFK
QTLDRGLRLL DDELAKLPEG ANLPGEAAFK LYDTYGFPLD LTQDALREKG RAVDTAGFDS
AMAEQKAKAR AAWAGSGETK DAAIWFDIAE EHGATEFLGY DTEISEGQVL ALVQDGAAVE
EAGEGQQVQI VVNQTPFYGE AGGQVGDTGL IKTETGAARV TDTKKTGGVF IHIAEVTLGT
IQRGQGAQLS VDHDRRSAIR ANHSATHLLH EALRRALGEH VAQRGSLNAP DRLRFDFSHA
KAMTPEELAQ VEREVNDFIR QNSPVETRIM TPDDARALGA QALFGEKYGD EVRVVSMGEL
PGSGKGTGGQ TYSLELCGGT HVARTGDIGM FALTSETASA AGIRRIEALT GQAAMDELRR
VDGELNEIAG IVKAQAGDVV SKVRALADER KALANEVAQL KRQLAMGGGS EDKPREINGI
KLIARRVEGV SGKELGPLVD EMKSRLGSGA VVVLAEADGK ATVAAGVTPD LTGRISAVEL
VQTATAALGG KGGGGRPDRA QGGAPSLAAA DSAISAVETL IGEKA