Gene Pden_0353 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_0353 
Symbol 
ID4579051 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp332260 
End bp334101 
Gene Length1842 bp 
Protein Length613 aa 
Translation table11 
GC content62% 
IMG OID639767668 
ProductP4 family phage/plasmid primase 
Protein accessionYP_914163 
Protein GI119383107 
COG category[R] General function prediction only 
COG ID[COG3378] Predicted ATPase 
TIGRFAM ID[TIGR01613] phage/plasmid primase, P4 family, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.764732 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGATG ATGACGCCCT CGGGCAGGTC CGGGCCGTGA TGAGCAATGC CGAAGAGGTC 
GATCTGCCCG AGGGGATGGA ACCTGACGGC CATGATGACG GCTACCCGGA TGATTATGCT
CCCCCGCCAC CCCCACCGGA TGAAGGCGGC GGCGAAGGTG AGCCCGAAGA TCCGGTTTCC
CGCGCCTCGC GCGAGCCGCT GAACGATCTC GGCAATGCCA GGCGTTTCGT CATCCATTTC
GGCGACGATA TCCTGTTCGT TTCACAGGTC GGCTGGTTCG TCTGGGATGG GAGCCGCTGG
CGGAAGGACG ATGAGATCAG CCGCGATGTG TCGCCGCTGA TCCGGGCGCA GGCGCATAAG
GTGTCCACAC TTATCCTGCA GGAAATCGAT TGGCTCCAGC CTAATGACCG GGACCGGAAG
CTGATCGAAG AGGATCGGGA TCTCAAGGTC CGGCGGCGCG AGATTGAGAA CGCACCCGGT
TATGCGGCCG ACGAATCGCT GATGAAGGAA CTGGCCTCCA TCGAAGCACG ATTGCGCGCT
CTTGATGCTG CCTTGAAGTC CTATCGAAAT CTGACGACCC GTCGGCTGAC CTGGGCGAAG
GATGCCGGAA ACTCCACCCG GATAGCGCAC ATGATCGCCG AGGCTCGGGT CATGCTGGCC
CGTGCGGTCG ATGATATGGA TCAGGGCGCA CTCGACGTGA ACACCCTGTC GGGCGTTCTG
CGCTTCACCC GCATCCCCAA CGATCCGGAA GCCGGCATGA CCGGCATGTC CAGCGTCGAA
CTGATCCCGC ACGACCGGGC GCAGCTGCTG ACGAAGATCA TGCCGGTGAT CTATGATCCG
GACGCCAAAT GCCCGCGTTT CGACAGCTTT CTTGAGCAGA TACAGCCGAA TATCGAGATG
CGCCGGTTCC TGCAGCGATG GTTCGGCCTC TCCATGACCG GGCTGGCCGT GCAGAAGCTC
GCATTCTTCC ACGGGGGCGG CGCCAACGGC AAATCCGTTC TGGTAGACCT GATGGCGAGG
ATGTTCGGCG ATTACTCGGC CTCTGCCCGT ATCGAATCGC TGACCGGAAA GAACAAGAAA
TCCGGTTCAG ATTCGCAGCC GGACCTGATG CCCCTGATCG CCGCCCGCTT CGTTCGAACG
TCGGAGCCAG AGGATGGCGA ACGCCTGCAG GAGGGCCTGG TCAAGGCCCT GACCGGCGGC
GAGCCGATGA TGATCCGTGC GCTCTACAGC GACTTCATCA TCTTCCGGCC GATCTTCAAA
CTGACCATAT CCGGCAACCA CCTGCCCGAA ATCCGGGGCG GTGACGACGG TATCTGGCGT
AGGGTCATGC TGGTGAACTT CCCGGTCCAG ATCCCGGAGA AGAAGCGCAT CCCGAAGGAG
GAACTGGACG AAATCCTCTG GCAGGAGAGG TCAGGCATCC TCAACTGGCT CATCCAGGGG
CTGATCGACT TCCTCGACGG TGGCCTTCAG GAACCGGATG ACGTCACCAG CGCAACCGAG
GGCTACCGGG CCGAAAGCGA CCCGATTGGC ACCTTCCTCG GCGATGCCAC CGTGGTGACT
GGGTTCGAGG GCGACTTCAT GACCGCCCGG GAACTGATCG AGGCCTTCAA CTTCTGGATC
GAAGAGCGGG GCGAGACGCG CTGGGGCAAT CGCACGGTGT CGAACAAGCT CAAAGCCAAG
TCCGGCACAT GGCGGCATCC CGAAACGAAC AAGACCTTCG CGCCGGGGAA ATCGGGCGTC
ACAGGCTATC GCGGCATCCG GCTCGATGAC ACGTTCCTTT CCCGCAAGCG CTCGGCCGAG
GCGTCGTCGT CGCAATCGTC CTGGGGAGGT TCGCCACGAT GA
 
Protein sequence
MSDDDALGQV RAVMSNAEEV DLPEGMEPDG HDDGYPDDYA PPPPPPDEGG GEGEPEDPVS 
RASREPLNDL GNARRFVIHF GDDILFVSQV GWFVWDGSRW RKDDEISRDV SPLIRAQAHK
VSTLILQEID WLQPNDRDRK LIEEDRDLKV RRREIENAPG YAADESLMKE LASIEARLRA
LDAALKSYRN LTTRRLTWAK DAGNSTRIAH MIAEARVMLA RAVDDMDQGA LDVNTLSGVL
RFTRIPNDPE AGMTGMSSVE LIPHDRAQLL TKIMPVIYDP DAKCPRFDSF LEQIQPNIEM
RRFLQRWFGL SMTGLAVQKL AFFHGGGANG KSVLVDLMAR MFGDYSASAR IESLTGKNKK
SGSDSQPDLM PLIAARFVRT SEPEDGERLQ EGLVKALTGG EPMMIRALYS DFIIFRPIFK
LTISGNHLPE IRGGDDGIWR RVMLVNFPVQ IPEKKRIPKE ELDEILWQER SGILNWLIQG
LIDFLDGGLQ EPDDVTSATE GYRAESDPIG TFLGDATVVT GFEGDFMTAR ELIEAFNFWI
EERGETRWGN RTVSNKLKAK SGTWRHPETN KTFAPGKSGV TGYRGIRLDD TFLSRKRSAE
ASSSQSSWGG SPR